Sphingomonas aliaeris: H5J25_17470
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Entry
H5J25_17470 CDS
T07559
Name
(GenBank) 2'-5' RNA ligase family protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sari
Sphingomonas aliaeris
Brite
KEGG Orthology (KO) [BR:
sari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sari03016
]
H5J25_17470
Enzymes [BR:
sari01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
H5J25_17470
Transfer RNA biogenesis [BR:
sari03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
H5J25_17470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
Motif
Other DBs
NCBI-ProteinID:
QQV77102
UniProt:
A0A974NUG1
LinkDB
All DBs
Position
3695469..3695999
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AA seq
176 aa
AA seq
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MNAPRVRLRHRFFYALFPPPPLAAEIAQRFAVEGVRMIRADRLHVTIDLSEDFADYPDGV
VQGLIAAGSQVDVPPFALTFDSVVDTPYTMSLRPEVPDPAMQALHDAIVAARVNAGVEGR
EGYAFTPHMTLAYRRGLAGVRSIPPVGLTVDRFVLVHSLIGQGRYDEIGCWPSRVR
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccccgcgggtgcggttgcggcaccggttcttttacgccttgttcccgccgccc
ccgctggcggcggagatcgcgcaaaggttcgcggtggagggcgtgcggatgatccgggcg
gatcggctgcacgtcacgatcgacctgtcggaagatttcgcggactatccggacggggtc
gtacagggattgatcgcggcgggatcgcaggtcgatgttccgccgttcgcactgaccttc
gatagcgtcgtggacacgccctatacgatgtcgctgcgtccggaggttcccgatccggcg
atgcaggcgctgcacgatgcgatcgtcgcggcgcgagtgaacgcgggcgtcgaggggcgc
gaggggtatgcgttcacgccgcacatgaccctggcctatcgcaggggtctggccggggtg
cgatcgatcccgccggtcgggttgacggtggaccggttcgtgctggtgcacagcctgatc
ggtcaggggcggtatgacgagatcgggtgctggccttcgcgggtgcggtga
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