Candidatus Sarcina troglodytae: HH195_00250
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Entry
HH195_00250 CDS
T06935
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
sarj
Candidatus Sarcina troglodytae
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarj03019
]
HH195_00250
Messenger RNA biogenesis [BR:
sarj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HH195_00250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
HD
TraI_2
DsrD
Inhibitor_I66
Motif
Other DBs
NCBI-ProteinID:
QPJ84455
LinkDB
All DBs
Position
52366..53337
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AA seq
323 aa
AA seq
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MSNTIPIRKINEFVKNERSEGFYLIKSVDLKTTNSNGKKYLDFVLADGTGEITAKKWEVK
EVEESEFRANTIVKVRGMVTSWQSSLQLKVEQIRNIVSEDKVNIDDYVQSAPIDSKTMFE
TIKFYINNMKNEDIKNIVNLMVEKNKEKLMYYPAAKKNHHSIKSGLLYHITTMLNLGEKI
CSIYDFLNTDLIYGGIILHDLAKIKEMASSELGIVDDYTLEGTLLGHITQGVKEIELAGQ
EVKADRESMILLEHMVLSHHYEPEYGSPIKPMIPEAEILHYIDLIDARMYDMRKVTNETE
VGKFSERLWSLENRRIYNHGLND
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatactattccaattagaaagataaatgagtttgtaaaaaatgaaagaagtgag
ggattttatttaataaaatctgtagatttaaaaactactaactccaatggcaaaaagtat
ttagattttgttctagcagatggaacaggagaaattactgctaagaagtgggaagttaaa
gaagtggaggagagtgaatttagagctaataccatagttaaagttagaggaatggttaca
agttggcaaagttctcttcaactaaaggtagaacaaataagaaatatagtttcagaagat
aaagtaaatatagacgattacgttcaaagtgcaccaattgatagtaagacaatgtttgaa
actataaaattttatattaataatatgaaaaatgaagatataaaaaatatagttaattta
atggtagaaaaaaataaagaaaaattaatgtattacccggcagcaaaaaaaaatcatcat
tctataaaaagcggacttttatatcatataactacaatgttgaatcttggtgaaaaaatt
tgtagtatatatgattttttaaatacagatttaatttatggagggataattcttcatgat
ttagcaaaaataaaagaaatggcttctagtgaacttgggatagttgatgattatacatta
gaagggactcttttaggacatataactcaaggggttaaggagattgaacttgcagggcaa
gaggtaaaggctgatagagaatccatgattttattagaacatatggtactatctcatcac
tatgagccagaatacggtagccctataaaaccaatgattccagaggctgaaattcttcac
tatattgatttaatagatgcacgaatgtatgatatgagaaaagtaacaaatgaaactgag
gttggaaaattttcagaaagattatggtctttagaaaataggagaatatataatcatgga
ttaaatgattaa
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