Candidatus Sarcina troglodytae: HH195_01760
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Entry
HH195_01760 CDS
T06935
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj03420
Nucleotide excision repair
sarj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HH195_01760
03430 Mismatch repair
HH195_01760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarj03400
]
HH195_01760
Enzymes [BR:
sarj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH195_01760
DNA repair and recombination proteins [BR:
sarj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HH195_01760
MMR (mismatch excision repair)
Other MMR factors
HH195_01760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
DEAD
SLFN-g3_helicase
PhoH
UvrD_C_2
ResIII
CbiA
AAA_18
AAA_30
NACHT
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QPJ84703
LinkDB
All DBs
Position
395740..397857
Genome browser
AA seq
705 aa
AA seq
DB search
MEKNNDFLIENKHLEDTLNILNKEVLNYINKRKEITEYILDYRKNAIEEYRDDEDKLIEY
FDHERYMKEQAFASIDKKLKELTTLKSSPYFGKINFIDSNFDDEEEMYIGRFGVIPEGDF
EPLIVDWRAPIASLFYHGSLGEAYYTAPDGKVKTDILKRRQIIVKKSELKGIFDSEVDIK
DEILQEILSNNSSEKLKDIVMTIQKEQDDIMRKERTKNIVVNGVAGSGKTTIALHRVAYL
LYNYRKELEDKVLILGPNHIFMEYISQVLPSLGESKVKQQTFLDFAAEQLEEPIEIAGFE
EYLDALVSGNKQIVEDTKYKNSTKIIDDLDILIRNMDLNYFKIEPAKYFGEEVVGVDEIK
EMFEKHYAYMPLFRRSEKIKRILISKIKDKRDEKFRELNKKVNELKSSLKPEELLIEENN
IEFKRSIEVREIVKEVMNSRQEIETWLGKKSIVKIYNEFNNNKILTTNDLAPILYLMINL
EGKKAKQSYRHVIIDEAQDYSPIQFKVIKELTGSKYFTIVGDVNQRINKVSEIPAMLNLD
NILNLDDIEVFNLNRSYRSTFEIIDYANKFLKETSITPLVRNGKNVEVINVKNKDDFGDK
IINCINEYNSDKLDSIAIITKDQNQLEQIYDIIKEKIHVVKFNREDIIYKGGVVIIPSYL
AKGLEFDGVIIAEIKESSKENKEEDLIKYIMATRALHRLKDITLE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaataatgattttttaatagagaacaagcatttagaagatactttaaatata
ttaaacaaagaggttctaaattatataaataaaagaaaagaaataacagaatatatatta
gattatagaaaaaatgctatagaagagtatagagatgatgaagataagttaatagaatat
tttgatcatgagagatatatgaaggagcaggcttttgcttctatagataaaaaattaaaa
gaacttactacattaaaaagttccccttattttggtaagataaattttattgattctaat
tttgatgatgaagaagaaatgtatatcggaagatttggagttattccagaaggagatttt
gaaccgttaattgttgactggagagcaccgatagcatcattattttatcatggaagttta
ggagaagcatattatacagcacctgatgggaaagttaaaactgatatcttaaaaagacga
caaataatagttaaaaagagtgaattaaagggaatatttgattctgaagttgatattaaa
gatgaaattttacaagaaattttgagtaataattcctctgaaaaattaaaagatatagtt
atgactatacaaaaggaacaagatgacataatgagaaaagaaagaactaagaatatagtt
gtaaatggtgtagcgggtagtggtaaaactactatagctcttcatagagtggcatatctt
ttatataattatagaaaagaacttgaggataaagttttaattttaggtccaaaccacata
tttatggaatatatatcacaggtgttaccaagtcttggagaatcaaaagttaaacaacag
acatttttagattttgcagcagagcaattggaagagccaatagaaatagcaggatttgag
gaatatttagatgctttagtttctggtaataagcaaattgtagaagacactaagtataaa
aattcaacaaaaataatagatgatttagatattttaataaggaatatggatttaaattat
tttaagattgaacctgctaaatattttggtgaagaggtagttggggtagatgaaataaaa
gaaatgtttgaaaaacattatgcatatatgcctttgtttaggagaagtgaaaagataaaa
agaatattaatctctaaaattaaagataagagagatgaaaagtttagagaattaaataaa
aaagtaaatgaattaaaatcttcattaaagccagaagaacttttaattgaagaaaataat
atagagtttaaaagaagtatagaagttagggaaattgttaaagaagttatgaattcaagg
caagaaatagaaacttggcttggaaagaaaagcatagttaaaatatataatgaatttaat
aataataaaatattaacaactaatgatttagcacctattttatatttgatgataaatctt
gaaggtaaaaaggcaaaacaaagttatcgtcatgtaataatagatgaggcacaagactat
tctccaattcaatttaaagtaataaaagaattgacaggaagcaagtatttcacaatagtt
ggagatgtaaatcaaagaataaataaagtgtcagaaattcctgctatgcttaatttagat
aatattttaaatttagatgatattgaagtttttaacttaaataggagttatagaagtact
tttgaaataatagattatgcaaataaatttttaaaagaaacttcaataacacctttagtt
agaaatggaaagaatgttgaagttataaacgtaaaaaataaagatgattttggagataag
ataataaattgtataaatgaatataatagtgataagttagatagtatagctattataaca
aaagaccaaaatcaattagaacaaatatatgatattataaaagagaaaattcatgtagtt
aaatttaatagagaagatataatttataagggtggtgttgtaataattccgtcttactta
gcaaaaggattggaatttgatggagttataatagctgaaataaaagaatcttctaaagaa
aataaagaagaggatttaataaaatatataatggcgactagagcccttcatagattaaaa
gacattacattagaataa
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