Candidatus Sarcina troglodytae: HH195_02770
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Entry
HH195_02770 CDS
T06935
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj02020
Two-component system
sarj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HH195_02770
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HH195_02770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sarj03021
]
HH195_02770
Transcription machinery [BR:
sarj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HH195_02770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_17
HTH_Crp_2
HTH_23
HTH_12
Sigma70_r4
HTH_3
HTH_21
HTH_IclR
HTH_20
PI3K_p85B
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
QPJ86491
LinkDB
All DBs
Position
628580..629965
Genome browser
AA seq
461 aa
AA seq
DB search
MEMNFNLNLTQEQKLIMTQQMQLSIKLLQMSTNDLREYIEKEFLENPVLEVQYESLENKT
KEQDRLEYKELIKYFESDNYGSQSYSDYSEDSVSPFTFISNPKSLKEHLLEQIIDIPIDD
YLRSICSYMIESLDNRGYLDVSTEEIEEELGCGKENVKRALILLHNLEPAGIGARDIKEC
LILQLKRLGKDNEMLEKIINNHLEDLADNKYQLIGKALKITAKEAQSFGDLIKTLEPKPS
RGFYTGENMKFIIPDAEIKKIGNEFFIVMNDKVLPKLSINSMYNEILRDNDDKDAVKYIE
EKIDKALFLVKSIDHRKTTLHKVLEKIVKKQRGYFEKGESALIPMTLKEVAEEIDMHEST
VSRAIREKYILTSFGTIKIKDLFTNGIQTSGKNSNKIEDISVVNIKKIIEKMVNEEDKVK
PLSDQIICEKLNKNGMNISRRTVAKYREEIGIKSSSKRKRF
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgaattttaatttaaatttaacacaagaacaaaaacttataatgacacaacaa
atgcaactatcaattaaattattacaaatgtcgactaatgatttaagggaatatatagaa
aaagagtttttagaaaatccagttttagaagttcaatatgaaagtttagaaaataaaaca
aaagaacaagatagattagaatataaagaacttataaaatattttgaatcagataattat
ggttctcaaagctatagtgattacagtgaagatagtgtttctccatttacgtttataagt
aatccaaaatcattaaaggaacatttgttagaacaaattatagatataccaattgatgat
tatctaagaagtatttgcagttatatgattgaatctttagataatagaggatatttagat
gtaagtactgaagaaatagaagaggaattaggatgtggaaaagaaaatgtaaaaagagct
ttaatacttcttcataatttagagccagcaggcattggggcaagagatataaaggaatgt
ctaatacttcaattaaaaaggcttggaaaagataacgaaatgttagaaaaaattataaat
aatcatttagaagacttggcagataataaatatcaacttatcggtaaagccttaaaaata
acagcaaaagaagcacaaagctttggtgatttaataaaaacattggaaccaaaaccgtca
agaggtttttatactggagaaaatatgaaatttataattcctgatgctgaaataaaaaaa
ataggaaatgaattttttattgtgatgaatgataaagttttgcctaagttatcgataaat
tctatgtataatgaaatacttagagataatgatgataaggatgcggtaaaatatatagaa
gaaaaaatagataaagcattatttttagttaaaagtatagatcatagaaaaacaacattg
cataaagttttagagaaaattgttaaaaagcaacgaggttattttgaaaaaggtgaaagt
gcattaattcctatgacattaaaagaggttgcagaagagatagatatgcatgaatcaact
gtatcaagggcaattagggaaaaatatatattaacatcttttggtacaataaaaattaaa
gatttatttacaaatggaatacaaacaagtggtaaaaatagtaacaaaatagaggatatt
tcagttgtgaatattaaaaaaatcatagagaagatggtaaatgaagaggataaggtaaaa
ccattatcagatcagataatttgtgaaaaattaaataaaaatggtatgaatatatctaga
aggacagtggcaaaatacagagaagagataggtataaaatcctctagtaaaagaaaaaga
ttttaa
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