Candidatus Sarcina troglodytae: HH195_02825
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Entry
HH195_02825 CDS
T06935
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH195_02825 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarj03019
]
HH195_02825 (rnr)
03016 Transfer RNA biogenesis [BR:
sarj03016
]
HH195_02825 (rnr)
Enzymes [BR:
sarj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HH195_02825 (rnr)
Messenger RNA biogenesis [BR:
sarj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HH195_02825 (rnr)
Transfer RNA biogenesis [BR:
sarj03016
]
Prokaryotic type
tRNA degradation factors
HH195_02825 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
OB_HELZ2
S1CSD-TOTE-2
Rep3_N
Motif
Other DBs
NCBI-ProteinID:
QPJ84904
LinkDB
All DBs
Position
641292..643520
Genome browser
AA seq
742 aa
AA seq
DB search
MGLKEVILNFMKEEAYKPMEIPEIAKIFNINKNEYKSFKKAIKTMEKEGLLARDESDKLG
LAQRMGVITGKIEIHDRGFGFLIPDIEGIKDLFIAKTNLMGAMNGDRVVAKIIKEGRNGK
RTEGIIINIVERVNKNIVGIYEDNKSFGFVLPEDKRIQNDIFISKKDRNGAKKGQIVMVE
ITRWPDGKRKNPEGKVVEILGRPGDKGIDIDIIIRKYNLPEDFPPSVLNSALDIEDFITE
DEIKGRLDLRNTKMVTIDGEDAKDLDDAVSIERLENGNFKLGVHIADVTHYVKERSVIDK
EAFKRATSVYLIDRVIPMLPKKLSNGICSLNPKVDRLTLSCIMEVNRQGKVVNHTIAQSV
IKTNERMTYTDVTKILRDNDVELIKRYKDLVDDFKAMEELCKILRKKRLDRGAIDFDFEE
CKIILDEKGKPIDIKPYERAIANRMIEEFMLLANETVAEHMEKLKVPFVYRIHENPDAEK
LEKFKAFIYNLGYNDITWGEEVNPKALQRVLDKFKGENEETIISTLLLRSMMQARYSPEC
AGHFGLAADYYCHFTSPIRRYPDLQIHRIIKEYLNKELTENRSKKLVSIVDSAAKQSSEM
ERVAQEAEREVDDLKKAEYMKDRIGEIFEGMISSVTGFGAFVELPNTIEGLVHITSFRDD
YYIYDEDRLILIGERNKKIYRLGDKLKVLCSKVDILSREVYFEIVEDKYILEEKERAKKI
QEEKLENIKRELNSESLKEDNI
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgggacttaaggaagttatactaaattttatgaaagaagaagcttataaaccaatggaa
attcccgaaatagctaaaatatttaatataaataagaatgaatataagtcttttaaaaaa
gccataaaaactatggaaaaagaaggcttacttgcaagagatgaaagcgataagttaggt
ttagcacaaaggatgggagtcattacagggaaaatagaaattcatgacagaggatttgga
tttttaattcctgatattgaaggaattaaagatttatttatagcaaaaactaatttaatg
ggtgctatgaatggtgatagagtagttgctaagataataaaagaaggcagaaatggaaaa
agaactgaaggtatcataattaatatagttgaaagagtaaataaaaatattgtagggatt
tatgaagataataaaagttttggatttgtgcttccggaagataaaagaattcaaaatgat
atatttatatctaaaaaagatagaaatggggctaaaaaaggtcaaatagttatggtagaa
ataacaaggtggccagatggaaagagaaaaaatcctgagggaaaggttgttgaaatttta
ggaaggccaggagataaagggattgatatagatattataataaggaagtataatctgcct
gaggattttccaccaagtgttttaaatagtgctttagatatagaagattttataactgaa
gatgaaataaaaggaaggttagatcttagaaatacaaaaatggtaacaatagatggagaa
gatgctaaggatttagatgatgctgtatctattgaaagattggaaaatggaaattttaag
cttggagttcatatagcagatgtaactcattacgttaaagagagaagtgttatagataag
gaagcttttaaaagagcaacatctgtatatcttatagatagggttattcctatgcttcct
aaaaagttatcaaatggaatatgttcattaaatcctaaagttgatagattaactttaagt
tgtattatggaggtaaatagacaaggcaaggttgttaatcatacaatagctcaatctgtt
ataaaaactaatgagagaatgacttatactgatgtaaccaagattttgagagataatgat
gtagaattaattaaaagatataaagatttagttgatgattttaaggctatggaagaactt
tgtaaaatcctaagaaagaagaggttagataggggagctattgattttgattttgaagaa
tgtaaaataattttagatgaaaagggaaagccaatagatataaaaccttatgaaagagct
attgcaaatagaatgatagaggaatttatgcttttagcaaatgaaacagttgcagagcat
atggaaaaacttaaagttccatttgtatataggattcatgaaaatcctgatgcagaaaag
cttgaaaagtttaaagcttttatttacaatctaggatataatgatataacatggggagaa
gaagtaaatcctaaagcacttcaaagggtgttggataaatttaagggtgaaaatgaagaa
acaataattagtacacttttacttagaagtatgatgcaagctagatattcaccagaatgt
gcagggcactttggattagcagcagattattattgccattttacatcgccaattaggaga
tatccagatcttcaaattcatagaataataaaagagtatttaaataaagagttaactgag
aatagaagcaaaaagttggtttcaatagtagatagtgcagctaaacaatcatcagaaatg
gagagagttgcacaagaggcagaacgtgaagttgatgacctaaaaaaggctgagtatatg
aaggatagaataggtgaaatatttgaaggaatgatatcatctgtgacaggttttggtgca
tttgtggagcttccaaacactatagaaggtttagttcatataacaagctttagagatgat
tattatatttatgatgaagatagattaattttgattggagaaagaaataagaaaatatat
agattaggcgataaacttaaagttttgtgttcaaaggtagatattttaagtagagaggtc
tattttgaaatagttgaagataaatatattttagaagaaaaagaaagagctaaaaaaata
caagaagaaaagcttgagaatataaaaagagaattaaatagtgaaagcttaaaagaagat
aatatataa
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