Candidatus Sarcina troglodytae: HH195_04475
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Entry
HH195_04475 CDS
T06935
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH195_04475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarj03019
]
HH195_04475
Messenger RNA biogenesis [BR:
sarj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HH195_04475
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_6
pre-PUA_NIP7
Motif
Other DBs
NCBI-ProteinID:
QPJ85207
LinkDB
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Position
1014146..1015810
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AA seq
554 aa
AA seq
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MKNKSSIKVIPLGGLGEIGKNITAIEFEDEIIIIDCGMTFPDSEMYGVDVVIPDITYLIN
NKEKVKGFFITHGHEDHIGGLPYVLQKINVPVYATKLTIALIKSKLEEHKILDICNLNVV
KYDDVIELEKLKVEFIKTNHSIADSASIAIYSPAGIIVHTGDFKVDLTPIDKDVINLAKY
AQLGRRGVLLLMADSTNALNKGYTMSESIVGETLNNLFSKASGRIIVATFASNIHRLQQI
INSSVKYGRKVAFSGRSMEKISEVAKELGYLNIPDGLLISLEDIGLYKSNQITIVTTGSQ
GEPMSALTRIANSNHRHITIEKGDTIIISATPIPGNERSVSKVVDELIEKGANVIYKSIE
DIHVSGHACQEELKLIHSLLKPRYFVPVHGEDKHLIMHSKIAEEIGVKKENIFILENGNV
LTLTRRYSRVTEKVPSGNVLIDGLGIGDVGNIVIKDRKHLSQDGIVNIIIVMDKESKQII
SGPDVVTRGFVYIRESGCILNDIKRVSAKTMEKCINHKIYQWSQIKSEIRNEVNSLIYNK
TKRNPMIIPIIIES
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataaaagtagtataaaagttataccattaggtgggcttggagaaattggaaaa
aatattacagcaatagaatttgaagatgaaataataatcatagactgtggaatgacattt
ccagattcagaaatgtatggggtggatgttgttattccggatataacatatttgataaat
aataaggaaaaagtaaaaggattttttataactcatggacatgaagaccatataggtggt
ttaccttatgttttgcaaaaaataaacgtacctgtatatgctacaaagcttactattgct
cttataaagagtaaacttgaagaacataaaattttagatatatgcaatttaaatgttgta
aagtatgatgatgtaatagaattagagaaattaaaggttgaatttattaaaacaaatcat
agtattgcagatagtgcatctattgctatttattcgccagctggaattatagttcataca
ggagattttaaagttgatttaactcctattgataaagatgttataaatttagctaaatat
gcacaacttggaagacgaggagttttacttcttatggcagatagtacaaatgcattaaat
aaaggttatacaatgtcagagagtattgttggtgaaacattaaataatttgttttcaaaa
gcaagtggtagaattatagttgcaacatttgcgtctaatattcatagattacaacaaatt
ataaattcttcagttaaatatggaaggaaagtagcttttagtggcagaagtatggaaaag
atatcagaggttgctaaagaacttggttatttaaatattccagatggacttttaataagt
ttagaggatataggtttatataaaagcaatcaaataactatagttacgacaggaagccaa
ggtgaaccaatgtctgcattaactaggatagctaattcaaatcatagacatataacaatt
gaaaaaggagacactattataatttcagcaaccccaataccaggaaatgaaaggtctgta
tcaaaagttgtagatgaacttatagaaaaaggagctaatgttatatataaatccatagaa
gatattcatgtttctggtcatgcgtgtcaagaagaattaaagcttatacattctttgtta
aaacctaggtattttgttcccgttcatggagaagataagcatttaataatgcatagtaaa
atcgctgaagaaattggagttaagaaggaaaatatatttattttagaaaatggaaatgtt
ttaactttaacaagaagatattcaagagttacagagaaggttccatcaggaaatgtttta
atagatggtcttggtattggtgatgttggtaatatagtaataaaggatagaaagcatttg
tcgcaagatggaattgttaatataattattgtcatggacaaagaaagcaagcaaattata
tcaggaccagatgttgttactagaggatttgtttatattagagaatctggatgtatctta
aatgatataaagagagtatcagctaagactatggaaaaatgtataaatcataaaatatat
caatggtctcaaataaaaagtgaaataagaaatgaggttaattctttaatatataataaa
acaaaaagaaatcctatgattataccaattataattgaaagttaa
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