Candidatus Sarcina troglodytae: HH195_04855
Help
Entry
HH195_04855 CDS
T06935
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj02024
Quorum sensing
sarj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH195_04855 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HH195_04855 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarj03019
]
HH195_04855 (hfq)
03036 Chromosome and associated proteins [BR:
sarj03036
]
HH195_04855 (hfq)
Messenger RNA biogenesis [BR:
sarj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
HH195_04855 (hfq)
Chromosome and associated proteins [BR:
sarj03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
HH195_04855 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Motif
Other DBs
NCBI-ProteinID:
QPJ85279
LinkDB
All DBs
Position
1091633..1091863
Genome browser
AA seq
76 aa
AA seq
DB search
MNKAVNNLQDIFLNNARKDKIHVSIFLVNGVQLKGYVKGFDSFTVVLDSEGRQQLVYKHA
ISTISPAKQILFNNEQ
NT seq
231 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagcagtaaacaatttacaagatattttcttaaacaatgctagaaaagataaa
atacatgtttctatatttttagtaaatggtgttcaactgaaaggttatgtaaagggattt
gatagttttacggttgttttagatagtgaaggaagacaacaattagtttataaacatgca
ataagcactatatcaccagctaaacaaatactatttaataatgaacaataa
DBGET
integrated database retrieval system