Candidatus Sarcina troglodytae: HH195_05725
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Entry
HH195_05725 CDS
T06935
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH195_05725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarj03019
]
HH195_05725
03009 Ribosome biogenesis [BR:
sarj03009
]
HH195_05725
Enzymes [BR:
sarj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HH195_05725
Messenger RNA biogenesis [BR:
sarj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH195_05725
Ribosome biogenesis [BR:
sarj03009
]
Prokaryotic type
rRNA helicases
HH195_05725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Helicase_RecD
Cas3-like_C_2
UTP25_NTPase-like
Flavi_DEAD
AAA_19
AAA_22
IATP
Motif
Other DBs
NCBI-ProteinID:
QPJ85442
LinkDB
All DBs
Position
complement(1285385..1286827)
Genome browser
AA seq
480 aa
AA seq
DB search
MENKFRDFKLDINILKAIENLGYEKPSSVQKEVIPNLLDKQDVIVKSKTGSGKTASFGLP
LCQSIDVENNKVQAIILAPTRELVLQIKEDLSNIGRIKKVRCEAIFGKQSMEGQIKKLKQ
RTHMVAGTPGRIIDHLEKKTLDLSSVEFVILDEADKMLSMGFIEQIEDILKKVNKNATVG
LFSATLPEKIEYLCKVYMKKPKFIEVKTLDLEKKIQENYIALDVKEKKRALWQFLYAKHP
NQSIVFCNTKDRVNEVLKELKYENILAKSIHGGMEQRDRLSVMEKFKNKEFKVLVATDVA
SRGIHIHDLSLVINYEVPMENESYVHRIGRTGRNGKEGVAISFVAEYEKRFLQSIKEYTK
KDIKEIFYPSKEEILDGKKIFKKDQSEILKNSKVKVAKKEIHKDIIKIHINAGKKKKIRA
LDILGCFSNLNGLTGEDIGIIDILDNISYVDILNGKGNIVLKNNTVKIKGKNVKIEKARK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaatttagagattttaaactggatataaatatactaaaggcaatagaaaat
ttaggttatgaaaagccttcaagtgttcaaaaagaagttataccgaatcttttagataaa
caagatgttatagttaaatctaaaacaggtagtggaaaaactgcaagttttggtcttcct
ttatgtcaaagtatagatgtggagaacaataaggttcaagcaataatattagctcctaca
agagaattggttcttcaaataaaagaggatttatctaacataggaagaattaaaaaagtt
agatgtgaagccatttttgggaaacaatcaatggaagggcaaataaaaaaattaaaacaa
agaactcatatggtggcaggaacaccagggagaattatagatcatttagagaaaaaaaca
ttagatcttagtagtgtagagtttgtgatattagatgaagctgacaagatgcttagtatg
ggattcatagagcaaatagaagatatattaaaaaaagtaaataaaaatgcaacggtaggg
cttttttcagcaacacttccagaaaaaatagaatatctttgcaaagtttatatgaaaaaa
cctaaatttattgaggtaaagactttagatttagaaaaaaaaatacaagaaaattatata
gctttagatgtaaaagaaaagaaaagagccttatggcaatttttatatgcaaaacatccg
aatcaatctatagttttttgtaataccaaagacagggttaatgaggttttaaaggaatta
aaatatgaaaatattttagctaagagtattcacggtggtatggaacaaagagatagatta
tctgttatggaaaaatttaaaaataaggaatttaaggttttagtagctactgatgtagcg
tctagagggattcatatacatgatttaagtcttgtaataaattatgaagttcctatggaa
aatgaaagttatgttcatagaataggtagaacggggagaaatggtaaagaaggagtagct
atatcttttgtggctgaatatgaaaaaagatttttacaatcaattaaagaatatactaaa
aaagatataaaagagattttttatccaagtaaagaggagatattagacgggaaaaaaata
ttcaaaaaagatcaaagtgaaatattaaaaaattcaaaagtaaaggtagcaaaaaaagaa
attcataaggatataataaaaattcatataaatgcaggtaaaaagaaaaaaataagggct
ttagatattttagggtgttttagtaatttaaatggattaactggagaagatataggaatt
atagatattttagataatatatcatatgtcgatattttaaatggaaaaggaaatatagta
ttaaagaataacacagttaaaataaaaggaaaaaatgtaaaaatagaaaaagctagaaaa
taa
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