Candidatus Sarcina troglodytae: HH195_06405
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Entry
HH195_06405 CDS
T06935
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH195_06405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarj03019
]
HH195_06405
03009 Ribosome biogenesis [BR:
sarj03009
]
HH195_06405
Enzymes [BR:
sarj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HH195_06405
Messenger RNA biogenesis [BR:
sarj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH195_06405
Ribosome biogenesis [BR:
sarj03009
]
Prokaryotic type
rRNA helicases
HH195_06405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Vitellogenin_N
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QPJ85569
LinkDB
All DBs
Position
1427143..1428735
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AA seq
530 aa
AA seq
DB search
MNNLKFENLALKDTVLKAIKDMGFEEPSQIQAESIPTALQGFDIIGQAQTGTGKTAAFGC
SLLSRIQISDKKKLPKALVLAPTRELAIQVNDELVRLAKYNNTVLLPIYGGQPIDRQMHA
LKRGVDVVVGTPGRILDLMRRGHLKLNDIEFLVLDEADEMLNMGFIDDLEEIVKSLKSER
QTLLFSATMPDQIRRLAKNYMKPDVKHISIKKNSLTVSKIEQYYFEIKHKDRFETLCRVI
DFDNPNAAIIFCKTKKGVDEVVEGMQSRGYMVEGMHGDMSQNFRMQTLKKFKEGNLDFLV
ATDVAARGIDVESVTHVINYDLPQDSESYVHRIGRTGRANREGIAYSLVTPKEYMMLKQI
QRNTKSTIHKKSVPTADEILETKFNSIVEDVKNTVEENNFSKFLPLATQLDENYNPVDVA
AALMKLLFDKEAPFDYENNEIESPSMEETRVFASVGRRDGVTPKTLVNFIKNTAKVNPKQ
IGDIDIKENFSFINLDSEILNVVMKRCIGQRLNRRKVNIEVANKKKKRKR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatttaaaatttgaaaatttagctttaaaagacactgttttaaaagctataaag
gatatgggatttgaggaaccttctcaaattcaagcagaaagcattcctacagccttacaa
ggctttgatataatagggcaagcgcaaactggtactggaaaaactgctgcctttggttgc
tcacttcttagtagaatacaaatttctgacaaaaagaaattacctaaagctcttgtttta
gcacctactcgtgaacttgcaatacaggttaatgatgaacttgtaagacttgcaaaatat
aacaatacagttttattacctatctacggtgggcaacctatagatagacaaatgcatgct
ttaaagcgtggagttgatgttgtagttggtactcctggaaggattttagaccttatgaga
agagggcacttaaaattaaatgatatagaattcttagttttagatgaagctgatgaaatg
cttaatatgggatttattgatgatttagaagaaatagttaaatctcttaagtccgaaaga
caaactcttttattttctgcaacaatgcctgatcaaattagacgtctagctaaaaactat
atgaaacctgatgttaaacacatatctataaagaaaaattctttaacagtttcaaaaata
gaacaatattatttcgaaataaaacataaagatagatttgaaacactttgtagagttata
gattttgacaatccaaatgcagctataattttttgtaaaacaaaaaaaggtgttgatgaa
gttgtagaaggtatgcaatctaggggttatatggtagaaggtatgcacggagatatgagc
caaaactttagaatgcaaactttaaaaaaatttaaagaaggaaatttagactttttagtg
gctacagatgttgcagctagagggatagatgttgaaagtgtaactcatgttataaactat
gatcttccacaagacagcgaaagctatgtgcatagaataggaagaactggaagagccaat
agagaaggtattgcttattctctagttactccaaaagaatacatgatgcttaaacaaata
caaagaaacactaaaagtacaatacacaaaaaatctgttccaactgctgatgaaatactt
gaaactaaatttaattcaatagttgaggatgtaaaaaatacagttgaggaaaataatttt
tctaaatttttaccacttgcaactcaacttgatgaaaattacaatccagttgatgtagct
gctgctctaatgaaattattatttgataaggaagctccttttgattatgagaacaatgaa
atagaatctccttctatggaagagactagagtttttgcttctgttggtagacgtgatgga
gtaactcctaaaacattagttaattttataaaaaatacagcgaaagttaatccaaaacaa
attggagatattgatataaaagaaaacttttcatttataaatcttgattctgaaatactt
aatgttgttatgaaaaggtgtattggtcaaagattaaatagaagaaaagtaaacattgaa
gttgcaaataaaaagaaaaaaagaaaaagataa
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