Candidatus Sarcina troglodytae: HH195_06805
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Entry
HH195_06805 CDS
T06935
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sarj
Candidatus Sarcina troglodytae
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sarj03032
]
HH195_06805 (topA)
03400 DNA repair and recombination proteins [BR:
sarj03400
]
HH195_06805 (topA)
Enzymes [BR:
sarj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HH195_06805 (topA)
DNA replication proteins [BR:
sarj03032
]
Prokaryotic type
DNA Topoisomerases
HH195_06805 (topA)
DNA repair and recombination proteins [BR:
sarj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HH195_06805 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
Zn_ribbon_GRF
Auto_anti-p27
HVO_2753_ZBP
zf_Rg
Toprim_2
Zn_ribbon_8
DUF1272
Motif
Other DBs
NCBI-ProteinID:
QPJ85645
LinkDB
All DBs
Position
complement(1518061..1520148)
Genome browser
AA seq
695 aa
AA seq
DB search
MGQNLVIVESPAKAKTIEKYLGKNYIVEASMGHIRDLPKSQLGVDIEGGYIPKYITIRGK
GELLNKLKKLAKKSDKIYLATDPDREGEAISWHLANALQIEENKKCRIEFNEITKSAVKA
SIKTPRAININLVDAQQARRILDRLVGYEISPILWKNIKWGLSAGRVQSAALKIICDREE
EIKKFIPKEYWTVDIKLKKDKKTFSVRLLSKNKKKIEINSKEESDFIINELKNNEYVVKK
VKKGTKNKNPLPPFTTSTLQQDASKKINFMTKRTMSVAQQLYEGVEIKGYGIVGLITYMR
TDSIRISKEAQDKALGFIEEVYGKEYIPESPRVYKSKKNIQDAHEAIRPTYIEITPEIAK
NNLSQEQYKLYSLIWKRFIASQMASCILNTNSIEIQNGEYNLRASGSNIKFDGFMKLYEY
LGEEDEAESLLPEINVEEILKEHSIEGKQHFTQPPTRYTEASFVKHLEEKGIGRPSTYVP
TISTLLDRKYVQREKKNLIPTELGFIVNNIVSEYFHQIVDVDFTAEMEQKLDCIELGKEE
WKNVVSEFFNPLKEAIDKAEKEICKVVIEDKVSDVPCDKCGRLMVIKHGRFGDFLACPGY
PECKNTKPIVEEIDAICPKCGGKIVAKRSKKGRRFYGCSNYPECDFVSWSEPTNEKCPKC
GSIMVKKYSKSKGEYLECINQECKEKKELLKKDVE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaaaatttagtaattgttgaatcgccagctaaagcgaaaactatagagaaatat
ttaggaaaaaattatatagtagaagcttctatgggacatataagagatttacctaaaagt
caactaggtgttgatatagagggaggatatatacctaaatatataactataagaggaaaa
ggtgagcttttaaataaattgaaaaagttagctaaaaaaagtgataaaatatatcttgca
acggatccagatagagaaggtgaagcgatttcatggcatttagctaatgctcttcaaata
gaagaaaataaaaagtgtagaatagaatttaatgaaataacaaaatcagcagtaaaggct
tcaataaaaactccaagagctataaatataaatttggtagatgcacagcaagcaagaaga
attttggatagattggtaggatatgaaataagtcctatactttggaagaatataaaatgg
ggtttaagtgctggaagagttcaatcagctgctcttaaaattatatgtgatagggaagaa
gaaattaaaaagtttattccaaaagagtattggactgtggatataaaacttaaaaaagat
aaaaaaactttctctgttagattattatcaaaaaataagaagaaaatagagataaatagc
aaagaagaaagcgacttcattataaatgaattaaaaaataatgaatacgtagttaagaaa
gttaaaaaaggaaccaaaaataaaaatccattacctccttttacaactagtacacttcaa
caagatgcaagtaaaaagattaattttatgactaaaagaactatgtcagtggctcaacag
ctttatgaaggtgttgaaataaaaggatatggaatagtaggacttataacatatatgaga
acagattcaattagaatatctaaagaggctcaagataaggctttaggatttatagaagag
gtatatggtaaagaatatattccagaatctccaagagtatataagagtaaaaaaaatatt
caagatgctcatgaagccataagaccgacatatattgagataacaccagagattgctaaa
aataatttatctcaagagcaatataaactatattcgcttatatggaagagatttattgca
agtcaaatggcatcatgtattttaaatactaatagtatagagattcaaaatggagaatat
aatttaagagctagtggttctaatataaagtttgatggatttatgaaactttatgaatat
ttaggtgaagaggatgaggcagaatctcttcttccagaaattaatgtagaagaaatatta
aaagaacactcaatagaaggtaaacaacattttacacaaccaccaacaagatatacagaa
gcttcttttgttaagcatttggaagaaaagggtataggaagaccgagtacttatgtacct
acaatatctacattattagatagaaaatatgttcaaagagaaaagaaaaatttaattcca
acagagttaggctttatagtaaataatatagtgtctgaatattttcatcaaatagtagat
gtagattttacagctgaaatggaacaaaagttagattgtattgaacttggaaaagaagaa
tggaaaaatgtagtgtctgaattttttaatccattaaaagaagcaattgataaggctgaa
aaggaaatttgtaaggtagtaattgaggataaagtaagcgatgttccatgtgataaatgt
ggaaggcttatggttattaaacatggaagatttggagattttttagcgtgtcctggatat
ccagaatgcaaaaatacaaagccaatagtggaggaaatcgatgctatatgccctaaatgt
ggtggaaagatagttgcaaaaagaagtaaaaagggtagaaggttttacggatgttctaat
tatcctgaatgtgattttgtaagctggagtgagccaacaaatgaaaaatgtcctaagtgt
ggctctataatggttaaaaagtattcaaaatctaagggagaatatttagagtgcattaat
caggaatgtaaagaaaagaaagaattattaaaaaaagatgttgaataa
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