Candidatus Sarcina troglodytae: HH195_08110
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Entry
HH195_08110 CDS
T06935
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj03030
DNA replication
sarj03410
Base excision repair
sarj03420
Nucleotide excision repair
sarj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HH195_08110 (polA)
03410 Base excision repair
HH195_08110 (polA)
03420 Nucleotide excision repair
HH195_08110 (polA)
03440 Homologous recombination
HH195_08110 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sarj03032
]
HH195_08110 (polA)
03400 DNA repair and recombination proteins [BR:
sarj03400
]
HH195_08110 (polA)
Enzymes [BR:
sarj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HH195_08110 (polA)
DNA replication proteins [BR:
sarj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HH195_08110 (polA)
DNA repair and recombination proteins [BR:
sarj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HH195_08110 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HH195_08110 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_2
XPG_I
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QPJ85895
LinkDB
All DBs
Position
complement(1778158..1780770)
Genome browser
AA seq
870 aa
AA seq
DB search
MKRLLILDGNSLLNRAYYALPLLSNKDGIYTNAIYGFSNMLFRLREDIAPDYIVATFDRK
APTFRHEKYDNYKAGRKKMPDELASQIPLVKEMLNLLSINIYEIDGFEADDIIGTLAKYA
QEKGIEVYIVSGDKDILQLADKNIKVCITKKGVSEKEVYDYDRMVSEFGVTPNQFIDVKG
LMGDKSDNIPGVPGVGEKTAFKLIKTYGSMENVLNHVDEISGKKLKENLIEYREQAIFSK
DLATIKIDVPIEFDLESIKSNENFDKIGLKNFFINLEMKTLITKIEGLEGNAEEEGEELK
VDFEEIKDFCKLKEVYSTIKDSIYLIFNLKNAEKYSTIEIEQILMSINNKNYILNMKELI
NDSNCIEILRELFESYNIKKYSYSVKNAITALRKLDIEFNNIKFDTEIAAYLIDSSKGEY
PLIDLINKYLGEYPKITELNKDIISINFMEKLTKTLETKIKEADMETLMYDLELPLANVL
SHMEIIGFKVNKDMLDELSIKFKEEINETQKEIYSLSEEEFNINSPKQLGKILFEKLDLP
VIKKTKTGYSTNAEVLEKLKDKHPIIEKITYYRQLAKIYSTYVEGLKNVIDTDGCIHSNF
NQTVTSTGRLSSTEPNLQNIPIKYEMGREIRKVFIPRKDTDVLVSADYSQIELRVLAHIS
NDENMIDGFKHHSDIHTKTASEVFKVDASEVTRLMRSRAKAVNFGIVYGIGDFSLAKDLN
ITRKEAKEYMDIYFERYPKIKDYIKNIIEEAKTTGSVKTMLNRRRFIPEINSSNKIVKAL
GERLAMNAPIQGSAADIIKLAMVNVYNKIKEKGLNSRIILQVHDELILNVPKEEIDVIKD
LLKAEMENVLDLSIPLEVDINLGDTWYDAK
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagattacttatattagatggtaatagtttattaaatagagcttattatgcacta
cctcttttaagcaataaagatggcatatatacaaatgctatatatggattttccaatatg
ctttttaggctgagagaggatatagcaccagattatatcgttgcaacttttgatagaaaa
gcacctacatttagacatgaaaaatatgataattataaagcaggtagaaagaagatgcca
gatgagcttgcaagtcaaatacctcttgtaaaagaaatgttaaatttattatctataaat
atatatgaaatagatggatttgaagctgatgatattataggaactttagctaagtatgct
caagaaaaaggtattgaggtttacatagttagtggagataaagatattcttcagttagct
gataaaaatattaaagtatgtataactaaaaaaggggttagcgagaaagaagtttatgac
tatgatagaatggttagcgaatttggtgtaaccccaaatcagtttatagatgttaaaggt
cttatgggagataaatcagataatataccaggagtgccaggggttggagaaaaaacagct
tttaagcttataaagacatatggaagcatggaaaatgtattaaatcatgtagatgaaata
agcggtaaaaaactaaaagaaaatcttatagaatatagagaacaggcgatattttcaaag
gatttagcaactataaaaatagatgtacctatagaatttgatttggaaagtataaaatct
aatgaaaattttgataaaataggacttaaaaacttttttataaatcttgaaatgaaaaca
ttaataactaaaatagaagggctagaaggaaatgcagaggaagaaggtgaagaattaaaa
gtagattttgaagaaataaaagatttttgtaaattaaaagaagtttatagtactatcaaa
gatagtatatatttaatatttaatttaaaaaatgcagagaaatattcaactatagagata
gaacaaatattaatgagtattaataataaaaattatatcttaaatatgaaagaattaata
aacgatagcaattgcatagaaattttaagagaattatttgaaagctataatataaaaaaa
tatagttatagtgtaaaaaatgcaataacagcattaaggaaattagatattgaatttaat
aatataaagtttgatactgaaattgcagcatatcttatagattcatcaaagggagaatat
cctttaattgatttaataaataaatatttaggtgagtatccaaagataactgaattaaat
aaagatataatttctattaattttatggagaaattaacaaaaacattagaaacaaagata
aaagaagctgatatggaaacattaatgtatgatttagaacttccattagccaatgtatta
tcacacatggaaataattggatttaaagttaataaagatatgttggatgaattatccata
aaatttaaagaagaaataaatgaaactcaaaaagaaatttatagtctttcagaagaagag
tttaatataaattcaccaaagcagcttggaaaaatactttttgaaaaattggatcttcct
gttataaaaaaaaccaagactggatattcaactaatgcagaagttttagaaaagttaaag
gataagcatcctataatagagaaaataacatattatagacaattagctaaaatatattca
acatatgtagaaggattaaaaaatgttatagatacggatggatgtattcattcaaacttt
aatcaaacagtaacatcaacaggaagactttcatcaacagagcctaatcttcaaaatata
cctataaaatatgaaatgggaagagaaataagaaaagtatttataccaagaaaagataca
gatgtgttggtttctgctgactattctcaaatagaacttagggttttggcccatatatct
aatgatgaaaatatgatagatggatttaagcatcattcagatattcatacaaaaactgca
tcagaagtttttaaagtagatgctagtgaagttacaaggcttatgagaagtagagcaaag
gcagttaattttggaattgtttatggtataggagattttagtctagctaaggatttaaac
ataacaagaaaagaagctaaggaatatatggatatatattttgaaagatatcctaaaatt
aaggattatataaaaaatataattgaagaggccaaaactactggtagtgtaaaaactatg
ttaaatagaagaagatttataccagagataaattcttcaaataagatagtaaaagcttta
ggtgaaagattagccatgaatgcaccaatacaaggaagtgcagcagatattataaaactt
gctatggttaatgtttataacaaaataaaagaaaaaggtttaaatagtagaataattctt
caagttcatgatgaactaatattaaatgttcctaaagaggaaatagatgttataaaggat
ttattaaaagctgaaatggaaaatgtattagatttaagtattcctttagaggttgatatt
aatttaggagacacttggtatgatgcaaaataa
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