Candidatus Sarcina troglodytae: HH195_09785
Help
Entry
HH195_09785 CDS
T06935
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HH195_09785 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sarj03021
]
HH195_09785 (rpoC)
03400 DNA repair and recombination proteins [BR:
sarj03400
]
HH195_09785 (rpoC)
Enzymes [BR:
sarj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HH195_09785 (rpoC)
Transcription machinery [BR:
sarj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HH195_09785 (rpoC)
DNA repair and recombination proteins [BR:
sarj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HH195_09785 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QPJ86176
LinkDB
All DBs
Position
complement(2096064..2099606)
Genome browser
AA seq
1180 aa
AA seq
DB search
MFELNNFDALQIGLASPAQIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKSKVRRERMAHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYIVIDPKETSLLKKQLLNEKEYREACDKYGDDSFVAGMGAEAIKCLL
SEIDLERSSVELKEELKQSSGQKRVRIIRRLEVIESFRKSGNKPEWMIVDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVEGGIAHNIKSAKRMVERVMPQVWDVLEEVIADHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAGNI
MKPSDGKPVCVPTQDMVLGSYYLTMDKDGAKGEGRYFSSVEEAIMAYQVKDIDIHAKINV
KVFKEINGEIKSGIIKTTPGFIIFNESIPQDLGFVNRENKSEMFDLEINFLITKKSLGKI
IDKCYLKHGPTKTSIMLDNIKATGYHYSSIGAVTVAASDMIVPKKKYELLAEADATVDKI
EKMYRRGLISEDERYERVIEKWTDTTEEVANTLMNSLDKFNPIFMMADSGARGSKSQIKQ
LAGMRGLMASPSGKIIELPIRASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVREEDCGTDEGLYVEEIREGLEVIESLAERLTGRYAAEDIYDSEGKELLVA
KNGYMDANLAEKIASTGIKKVKIRSVFTCNSKIGVCAKCYGMNMATAQKINIGEAVGIVA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEVAGSVRIEET
KKKRTVFVLTDSGEEHTYDIPFGSRLKVHDGDIIEAGDEITEGSVNPHDIMNIKGVHGAR
EYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKIKVLESGDTDLLPGVMIDMFNFREENA
RIEALGGEKATGEEVLLGITKAALATESFLSAASFQETTRVLTDAAIKGKIDPLVGLKEN
VLIGKLIPAGTGMIRYRNVKLNTENNVCEKETAMDLEESN
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgagttaaacaattttgatgcattacaaataggtctagcatctccagctcaaatt
agagagtggtcaagaggagaagtaaaaaagcctgaaacaataaattatagaactttaaaa
ccagagagagatggtctgttttgtgagagaatatttggacctatgaaggactgggaatgt
cattgtggaaaatataagagagtaagatataaaggcgtagtttgtgatagatgtggtgtt
gaagtaacaaaatctaaagtaagaagagaaagaatggctcatatagaattagctgcacca
gtatcacatatttggtattttaaaggaataccatcaagaatgggattaattctagatatg
tctccaagagcactagaaaaagttttatatttcgcttcatatatagtgatagatccaaaa
gaaacttcgctattaaaaaagcaacttttaaatgaaaaagaatatagagaagcatgtgat
aaatatggtgatgatagtttcgttgcaggaatgggagcagaagctataaaatgtttatta
tctgaaatagatttagaaagatcatcagttgaattaaaagaagaacttaaacaaagttca
ggacaaaaaagagttagaataataagaagacttgaagttatagagtcatttagaaaatca
ggaaataaaccagagtggatgattgttgatgttataccagttataccaccagatttaaga
ccgatggttcagttagatggaggaagatttgcaacatctgacttaaatgatttatataga
agagttataaatagaaataatagacttaaaaagttattagatttaggagctcctgatata
atagtaagaaatgaaaaaagaatgcttcaagaagcagtggatgctttaattgataatggt
agaagaggaagaccggtaactggtccaggaaatagacctcttaaatctttatctgatatg
ttaaaaggaaaacaaggaagatttagacaaaatcttttaggaaaaagagttgattattct
ggtagatctgttatagttgttggtccagaattgaaaatgtatcaatgtggtcttccaaag
gaaatggcattagagttatttaaaccatttgtaatgaagaagttagttgaaggtggaata
gctcataacataaaaagtgcaaaaagaatggtagaaagagtaatgccacaggtttgggat
gttttagaagaagttattgcagatcatccagtattattaaatagagcacctactttacac
agattaggaattcaagcattccaacctgttttagttgaaggtagagctatcaaacttcat
ccgcttgtttgtactgcttacaatgctgactttgatggagaccaaatggctgttcacgtt
ccgttatcagttgaagctcaagctgaagctagatttttaatgcttgctgcaggaaatata
atgaaaccatctgatggaaaaccagtttgtgtacctacacaagatatggtacttggatct
tattatttaacaatggataaagatggtgcaaaaggtgaaggaagatatttttcatcagta
gaggaagctataatggcttaccaagtaaaagacatagatatacatgctaaaataaatgtc
aaagtgtttaaggaaattaatggagaaataaaatcaggaataataaagacaactcctgga
tttattattttcaatgaatcaattcctcaagatttaggttttgttaatagagaaaataaa
tcagaaatgtttgacttagaaattaactttttaataactaaaaaatctttaggtaaaatt
atagataaatgttatttaaaacacggaccaactaaaacatcaattatgctagataatata
aaagctacaggatatcattattcatcaattggtgcagtaacagttgcagcatcagatatg
atagttcctaagaaaaaatatgaattattagcagaagcagatgcaactgttgataaaatt
gaaaagatgtatagaagaggtcttatatctgaagatgagagatatgaaagagtaattgaa
aaatggactgatacaacagaagaggttgctaatactcttatgaatagtttggataaattt
aatccaatatttatgatggcagattcaggagccagaggttctaaatctcagattaaacag
ttagcaggtatgagaggacttatggcaagtccatcaggtaaaattatcgaacttccaatc
agagcttcatttagagaaggtcttgatgtattagaatactttatttctacacatggtgct
agaaaaggaaatgccgatacagctttaaaaactgccgattcaggttacttaactagaaga
ttagtagacgtaagtcaagatgttatagttagggaagaagattgtggtacagatgaagga
ttatatgtagaagaaatcagagaaggattagaagttatagaaagtttagctgaaaggcta
acaggtagatatgctgcagaggatatatatgattcagaaggtaaagaacttttagtcgct
aaaaatggatatatggatgctaatttagctgaaaagatagctagtactggtataaagaaa
gttaaaattagatcagtatttacatgtaattcaaagataggtgtatgtgctaaatgctac
ggaatgaatatggctacagctcaaaaaataaacattggagaagcagtaggaatagttgca
gcacaatcaataggagaaccaggaactcagcttacaatgagaacattccatactggtgga
gttgctggagccgatataactcaaggtcttccaagagttgaagagctttttgaagctaga
aaaccaaaagggttagctatagtaagtgaggtagcaggttctgttagaatagaggaaact
aaaaagaagagaaccgtatttgtgcttacagattcaggagaagagcacacttatgatata
ccatttggttcaagacttaaggtacatgatggtgatattatagaagcaggggatgagata
acagaaggttctgtaaatcctcatgatataatgaatatcaaaggtgttcatggggctaga
gaatatcttctttcagaagttcaaaaagtttacagacttcaaggtgttgatataaatgat
aaacatttagaagttgttgtaagacaaatgactagaaaaattaaggttttagaatctggt
gatactgatcttttaccaggtgtgatgatagatatgtttaactttagggaagaaaatgct
agaatagaagctttaggtggtgaaaaagctactggagaagaagttttacttggtataact
aaagctgctttagcaacagaaagtttcttatcagcagcatcattccaagaaacaacaaga
gtattaacagatgcagctataaaaggtaaaatagatccacttgttgggttgaaagaaaat
gtgttaataggtaaattaataccagcaggaactggaatgataagatatagaaatgttaag
cttaatactgaaaataatgtttgtgaaaaagaaacagctatggatttagaagaatcaaat
taa
DBGET
integrated database retrieval system
