Candidatus Sarcina troglodytae: HH195_10135
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Entry
HH195_10135 CDS
T06935
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HH195_10135 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarj03400
]
HH195_10135 (mfd)
Enzymes [BR:
sarj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH195_10135 (mfd)
DNA repair and recombination proteins [BR:
sarj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HH195_10135 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
IstB_IS21
TPMT
Motif
Other DBs
NCBI-ProteinID:
QPJ86228
LinkDB
All DBs
Position
complement(2162692..2166213)
Genome browser
AA seq
1173 aa
AA seq
DB search
MRLQGLINPLLNSDSFTSIKDSLNRNKNLEINGLSESGKSYMINAIYEEQDKSMVIVTHS
DIEARNMCEDLSFYTQDVYYLPAKEIVFYNIAAISGDLRWARLSVIREILNKKKKIIIVT
MDSFATTYTPVNLFKENTIKLKAGKELNLLELSKKLLGCGYERVEVVEGKGEFSLRGGIL
DIYPPNSSVPYRIELFGDEIESIRRFNVESQRSIDKIREIEIFPAKEIILNDEIVDYAIK
NISSELENFKESKNHDDEVINRVCDMVNRNIENLKENWTFETIDSYLPFFFKKPSTLFDY
LDNYLMIIDDTKRCRGKLDSTIIEFKENYESFLERGSILPSQGNLLLDEEIIINSFKDRK
IVAINSFEGSKDFYSLCESATFKQGTLNNYQGQLDFLIDDIKDRKARGFKTIILAGTKPR
GERLVNTLRENDIESVYKEKIDEIKDGEVVITYGSQLKGFEYSDLKLCLISDKEFFGEGK
RKSSKKKIKQKGVAKIASFGELKPGDYVVHVNSGIGVYKGIKQIEVQGHMRDYLDIEYTK
GDKLYVPVEQLDLVQKYIGSEGSSPKVNKLGGNEWIKAKAKARKSINDIAEDLVNLYATR
AALKGYKFSKDTQWQKQFEDEFPHDETPDQLTSLEEIKKDMESDKPMDRLLCGDVGYGKT
EVAIRAAFKAVMDGKQVAFLVPTTILADQHYNNFLKRFSGFPIKVDMVSRFRSRKQQTET
IKALKEGNVDILIGTHRLVSKDIEFKDLGLLIVDEEQRFGVAQKEKIKSVKKNVDVLTLS
ATPIPRTLHMSLTGVRDISVIETPPEDRYPIQTYVVEQNDQLIRDAILREIGRGGQVYFV
YNRVESIQSMASYIQNLVPEGKVTIIHGQMTERQLEKEMIAFMNKEFNILVCTSIIETGI
DIPNVNTMVVYDADKMGLSQLYQLRGRVGRSNRVAYTYFTYQKDKILTEVAEKRLKALKD
FTELGSGFKIAMRDLEIRGAGNMMSSAQHGQMAAVGYDLYCRMLEDTIKLIKGDIDQEPV
ETTVDIKVDAFIPSTYIEDEIQKIEIYKKIASIQNMDDYVYVEEELGDRFSTIPKEIYNL
MDIAYIKSKGKILNIEEIKEINNEVIFKFESRERTDKQLFIRLLEKNKENILFRFGDKPA
FVYKYKDMKKESVLEKFKEILDDLVSYKNKKLK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
ttgagactacaagggttaataaatcctttattaaatagtgatagctttacaagcataaaa
gattctttaaatagaaataaaaatttagagataaatggactttctgaatctggaaaaagt
tatatgataaatgctatttatgaggagcaagacaaatctatggttatagtaacccatagt
gatatagaagctagaaatatgtgtgaggatttatcgttttacacacaggatgtttattat
ttacctgcaaaggaaatagtattttataatattgcagctatatctggcgatttaagatgg
gctagattatctgttataagggaaatattaaataagaaaaagaaaataattatagtaact
atggattcttttgcgacaacatatacacctgttaatttatttaaggaaaatactattaaa
ttaaaggctggaaaggaactaaatttattagagttatctaaaaagcttttagggtgtgga
tacgaaagagtagaggttgttgaaggaaagggagaattttctttaagaggtgggatatta
gatatatatccacctaatagttctgttccatatagaattgagctttttggagatgaaatt
gagtcaattagaagatttaatgtagaatctcaaagaagtattgataagataagggaaatt
gaaatttttccagctaaagaaataatattaaatgatgagattgtagattatgctataaaa
aatataagttctgaacttgaaaattttaaagaatcaaaaaatcatgatgatgaagttata
aacagagtctgtgatatggtaaataggaatatagaaaatttaaaggaaaattggactttt
gaaactatagatagttaccttccttttttctttaaaaagccgtctacactttttgactat
ttggataattatttaatgataatagatgatacaaaaagatgtagaggaaagcttgatagt
acaattattgaatttaaagaaaattacgaatcttttttggaaagaggaagtatacttcca
tcgcaggggaatttattgttagatgaagagattattattaattcttttaaagatagaaaa
atagtagctataaattcttttgaaggaagtaaagatttttattctttgtgtgaaagtgca
acttttaagcaaggcacattaaataattatcaaggacagttagattttcttatagatgat
attaaagatagaaaagctagaggttttaagacgattattttagcaggaacaaagccaagg
ggggaaaggcttgttaacactttaagggaaaatgatatagagagtgtatacaaggaaaaa
atagatgaaattaaggatggagaagttgtcataacttatggaagtcaacttaaaggtttt
gaatattcggacttaaaattatgtttaatttcagataaagaattttttggtgaaggaaaa
agaaaatcatcaaagaaaaaaataaaacaaaaaggtgtagccaaaatagcaagctttgga
gaacttaagccaggtgattatgtagttcatgtaaatagtggtattggtgtttataaaggc
ataaagcaaatagaagtacaaggtcatatgagggattacttagatattgagtataccaaa
ggagataaactttatgttcctgttgaacaattggatttagttcaaaagtatataggttca
gaaggaagttctcctaaggtaaataagcttggaggaaatgaatggataaaagccaaagcc
aaagctagaaaatctataaatgatatagctgaagatttggtaaacctttatgcaacaaga
gctgcattaaagggatataagttttcaaaagatactcaatggcaaaaacagttcgaggat
gagttccctcatgatgaaacaccagatcaattaacatctttagaagaaataaaaaaagat
atggaatctgataagcctatggacagacttttatgtggagatgttggttatggtaaaaca
gaggttgcaataagagcagcttttaaagctgttatggatggaaagcaagtagcattttta
gttccaacaactatattagcagaccaacattacaataactttttaaaaagattttcagga
tttcctataaaggttgatatggtaagtagatttagaagtcgaaaacaacaaacagaaact
attaaggcattaaaagaaggtaatgtagatatcttaataggaactcataggcttgtttct
aaagatatagaatttaaagatttaggtcttttaatagtagatgaagaacaaagatttgga
gttgctcaaaaggaaaaaattaaaagtgttaaaaagaatgtagatgttttaaccctaagt
gctacgcctattccaagaacacttcatatgtcattaacaggagttcgtgatatatcagta
atagaaacgccaccagaggatagatatccgatacaaacttatgttgtagaacaaaatgat
caattgataagagatgctattcttagagaaataggaagaggtggtcaagtttattttgta
tataatagagttgaaagtatacaaagcatggcaagttatattcaaaatttagttccagaa
ggaaaggtaactattattcatggtcaaatgacagaaaggcaattagaaaaagaaatgatt
gcttttatgaataaggagtttaatatattagtttgcacatcaataatagaaactggaata
gatattccaaatgttaatacaatggtagtctatgatgcagacaaaatgggactatctcaa
ctttatcagttaaggggaagagtaggaagaagtaatagggttgcttatacttattttact
tatcaaaaagataagattttaacagaagttgctgagaagagacttaaagctcttaaagat
tttacagaactaggttcgggatttaaaattgctatgagagatttagaaataagaggagca
ggaaatatgatgagttctgctcaacatggtcaaatggctgctgttggatatgatttatat
tgtagaatgcttgaggatactataaagctaattaaaggtgatatagatcaagaaccagtt
gaaacaacagttgatataaaagttgatgcatttattccatcaacgtatatagaagatgag
atacaaaaaattgagatatataaaaaaatagcatctattcaaaatatggatgattatgta
tatgttgaggaggaacttggagatagattttcaaccataccaaaagagatttacaatctc
atggatatagcatatataaaaagtaaaggaaaaattttaaatatagaagaaataaaagag
ataaataatgaggttatattcaaatttgaaagtagagaaagaactgataaacagttattt
ataaggcttttagaaaagaataaagaaaatatattgtttagatttggtgataaaccagcc
tttgtttataaatataaggatatgaaaaaagaaagtgttttagaaaaatttaaagaaata
ttggatgatttagtttcctataaaaataaaaaattgaaataa
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