Staphylococcus arlettae: SAP2_19830
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Entry
SAP2_19830 CDS
T06808
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sarl
Staphylococcus arlettae
Pathway
sarl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAP2_19830 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarl03019
]
SAP2_19830 (rnr)
03016 Transfer RNA biogenesis [BR:
sarl03016
]
SAP2_19830 (rnr)
Enzymes [BR:
sarl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SAP2_19830 (rnr)
Messenger RNA biogenesis [BR:
sarl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAP2_19830 (rnr)
Transfer RNA biogenesis [BR:
sarl03016
]
Prokaryotic type
tRNA degradation factors
SAP2_19830 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_HELZ2
Rho_RNA_bind
OB_Dis3
RHH_9
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BBK28799
LinkDB
All DBs
Position
complement(2048717..2051104)
Genome browser
AA seq
795 aa
AA seq
DB search
MNLKQSIETIIKQPDYEPMSVSDFQDALGLSSADSFRDLIKVLVELEQTGLIERTKTDRY
QRKVASKQKTKALVKGKLSQNKKGFAFLRPEDSEMDDIFIPPTKINRAMDGDTVLVEVQN
SRGEHKGKTEGEVKSIETHSVTQVVGTYSEARHFGFVLPDDKRIMQDIFIPKGQNLGAID
GHKVLVQITKYADDNSNPEGHVSAILGHKNDPGVDILSIIYQHGIEIEFPDKVLEEAEAV
PDEIKPSEITGRRDLRDELTITIDGADAKDLDDAISVQQLSNGNTQLTVSIADVSYYVTE
NSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPDVDRLTLSCRMEIDEHGDIVNH
EIFDSVIHSDYRMTYDAVNEIITDKNEATRNKYSEVTPMLDLAQDLSQRFIQMRKRRGEI
DFDINEAKVLVNEEGLPTDIQVRNRGEGERLIESFMLAANETVAEHFDKLDVPFIYRVHE
QPKSDRLRQFFDFITNFGLMIKGTGEDIHPSTLQKIQQEVDGLPEQMVISTMMLRSMQQA
HYDDTNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIDNAMDEKELRKWEDSLPEI
AEHTSQRERRAIEAERDTDELKKAEFMVQHIGDEFEGIISSVANFGMFIELPNTIEGMVH
VANLTDDYYHFDERQMAMIGERQAKVFRIGDAVKIKVIHVDVDERMIDFQIVGMPLPKNE
RSQRPARGKTIQAKTRGKSLDKSKDDRQQGKGNKKKKSRKGKNQRNRDSQKSGNTKHKPF
YKDKKVKNKARKKKK
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagcaatctattgaaacaatcattaaacaacctgactatgaaccaatgtca
gtgtcagatttccaagatgcattaggtttaagcagtgccgactcatttagagatttaata
aaggtgctagttgaactagaacaaactggtttaatagaaagaactaaaacagatagatac
caaagaaaagtagcttcgaaacaaaaaacgaaggcattagtaaaaggtaagctaagccaa
aataaaaaaggatttgcctttctacgcccagaagatagcgaaatggatgatatctttatt
ccacctactaagattaacagagcgatggatggtgacacggtccttgtagaagtacaaaac
tcacgtggtgaacataaagggaaaactgaaggtgaagtaaaatctatagaaacacattca
gttacacaagtagtaggtacttacagtgaagcacgtcacttcggctttgtgctaccagat
gataaacgtattatgcaagatatctttattcctaaaggtcaaaatttaggtgctattgat
ggtcataaggtgttagtacaaattactaaatacgccgatgacaattctaatccagaaggt
catgtttctgctattttaggacacaagaatgatccaggtgtagatattttatctattatt
tatcaacatggtatagaaattgaatttcctgataaagtgttagaagaggcagaagcagta
ccagatgaaattaaaccgtcagaaattactggtagacgtgatttacgagatgaactcact
ataacgattgacggtgcagatgcaaaagacttagatgatgcgattagtgtgcagcaatta
tctaatggtaatactcaattaacggttagtattgcggatgttagttactatgtcactgaa
aattccgcattagataaagaagcatatgatcgtgctacaagtgtctatttagtagataga
gtaataccgatgattccacatcgtttaagtaatggtatttgttcattgaatccagatgta
gaccgcttaacattaagctgtcgtatggaaatagatgagcatggagatatcgttaatcat
gaaatattcgatagtgttatccattctgattaccgtatgacctatgatgcagtaaacgaa
ataataacagataaaaatgaagctacacgtaacaaatatagcgaagtaacaccaatgcta
gatttggctcaagatttgtcacaacgttttatccaaatgcgtaaacgtcgtggtgaaatt
gattttgatataaatgaagctaaagtgttagttaatgaggaaggtctacctaccgatatt
caagtgcgtaatcgtggagaaggtgaacgcttaattgaatcatttatgttagctgctaac
gaaactgtagcagaacattttgataagttagatgtaccatttatttatcgtgtacatgag
caaccaaaatcagatagattacgccaattcttcgattttattacgaatttcggcttgatg
attaaaggtacaggagaagacatccatccttcaacattacaaaaaattcaacaagaagta
gatggtttaccagaacaaatggttatctctaccatgatgttaagatcaatgcaacaagca
cattatgatgacaccaatttaggtcattttggtttgtcagcagaatattatacacatttc
acgtcacctatacgtcgttatccagatttaactgtacaccgtctcattcgtaagtattta
atcgataatgcaatggacgaaaaagagttaagaaaatgggaagatagcttaccagaaatt
gcagaacatacatctcaaagagaacgtcgtgcgattgaagccgaacgtgacacagatgaa
ctgaagaaagcagaatttatggtacagcatattggtgatgaatttgaaggtattattagt
tctgttgctaactttggtatgttcattgaattaccaaataccattgaaggtatggttcac
gtagctaacttaacggatgactattatcacttcgatgagcgccaaatggcgatgattggt
gaacgccaagcaaaagtgttccgtattggtgatgcagtgaaaattaaagttatccatgtt
gatgtggatgaacgcatgattgatttccaaatcgtaggtatgccattacctaaaaatgaa
cgtagtcaaagaccagcacgtggtaaaacaattcaagctaaaacacgtggtaagtcatta
gataagtcaaaagatgatcgtcagcaaggtaaaggtaataaaaagaaaaaatcacgtaaa
ggtaaaaaccagcgtaatcgtgatagccaaaaaagtggtaacactaaacacaaaccgttt
tacaaagataaaaaagtcaaaaacaaagcacgtaaaaagaaaaaataa
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