Staphylococcus arlettae: SAP2_23300
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Entry
SAP2_23300 CDS
T06808
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sarl
Staphylococcus arlettae
Pathway
sarl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sarl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAP2_23300 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarl03400
]
SAP2_23300 (mfd)
Enzymes [BR:
sarl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAP2_23300 (mfd)
DNA repair and recombination proteins [BR:
sarl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAP2_23300 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
Glyco_hydro_115
UB2H
RecG_dom3_C
DUF3105
IstB_IS21
Adhesin_P1_N
Motif
Other DBs
NCBI-ProteinID:
BBK29146
LinkDB
All DBs
Position
complement(2418546..2422058)
Genome browser
AA seq
1170 aa
AA seq
DB search
MKSIITDYINNDKRYQELNEVFGEDNILVTGLSASAKATIIAEKFLQSSKQLLIVTNNLY
QADKLETDLLQFVPANDIYKYPMQDIMTEEFSTQSPQFMSERVRTLTALAQNQRGLFIVP
LNGLKKWLTPVDMWKAHQLTLQVGDDIDVDAFLTKLVNMGYRRESVVSNLGEFSLRGGII
DVYPLIGEPVRIELFDTEVDSIRDFDVETQRSNENIEQIHITTASDYIITDEVLQHTKEQ
LQKAYEETRPKIDKSVRNDLKETYESFKLFEDTHFDHQVLRRLVAFMYEQPATIVDYFQE
DAIIAVDEYNRIKETEQTLTTEADEFTQNLIESGKGFIGQTFVSYDNFESHLNVFNVAYF
TLFTATMPVKLNHIIKFSCKPVQQYYGQYDIMRSEFQRFIQNDYTIVILAETEVKKERIQ
SMLSEMHIPTFIDGPNNDIEGGCAVITEGSLSEGFELPYMQLVVVTERELFKSKQKKKRK
QQKTISNAEKIKSYQDLKVSDYVVHVHHGVGRYLGVETLEVGGVHKDYIKLQYKGTDQLF
VPVDQMDQVQKYVASEDKSPKLNKLGGTEWKKTKAKVQQSVEDIADELITLYKEREMSVG
YQYGPDTAEQNDFELDFPYELTADQAKSITEIKQDMEQQRPMDRLLCGDVGYGKTEVAVR
AAFKAIYEGKQVAFLVPTTILAQQHYETLIERMQDFPIDIELISRFRTTKEIKETKEGLK
SGKVDIVVGTHKLLGKDISYKDLGLLIVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALEREISREGQVFYLYNKVQ
SIYEKREQLQMLLPDANIGVAHGQMTERDLEETMLGFINHEYDVLVTTTIIETGVDVPNA
NTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTETAEERLQAIKEFTELG
SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKPESEEAPEVE
IELNIDAYLPAEYIQNEQAKIEIYKKLRKIESETQLIDVKDELLDRFNEYPIEVERLLDM
MEIKVHALHVGVTSIKDKGKQIEIYLSEKATQDINGETLFKQTQPLGRAMKVGVQDGKMK
VTLTKAKQWFENLKFLAKCLEESMVIEDAN
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaataattacagactatattaacaatgacaaacgttaccaagaattaaacgaa
gtatttggtgaagataatatcttagtgacaggattatcagcgtctgcaaaagcaacaatt
attgcagaaaagtttttgcaaagtagtaaacagctcttaattgtgactaataatttatat
caagctgataaactagaaacagatttattacaatttgtgcctgctaatgatatttataaa
tatccaatgcaagatattatgacagaagaattttcaacacaaagccctcaatttatgagt
gagcgtgtccgaactttaacggcactggctcaaaatcagagaggcttatttatcgttcca
ttaaatggcttgaaaaaatggttgacacctgtagatatgtggaaagcacatcagcttacg
ttacaagttggtgatgatattgatgtcgatgcatttttaacaaagttagttaatatggga
tatcgccgtgaaagtgttgtatcaaaccttggagaattttctttgcgtgggggcattata
gatgtgtatccattaattggggaacccgtacgtatcgaattatttgatacggaagtcgac
tcaattagagattttgatgttgaaacacaacgttctaacgaaaatatagagcaaatacac
attacgactgctagcgactatattattacagatgaagtattacaacatactaaggaacag
ttgcaaaaagcatatgaagaaacaagacctaaaattgataaatcagtaagaaatgattta
aaagaaacatatgaaagttttaaattatttgaagatactcattttgaccatcaagtattg
cgacgcttagttgcattcatgtatgaacaacctgcaacaatcgtagactatttccaagaa
gatgcaatcattgctgtcgatgaatacaatagaataaaagaaacagaacaaactttaaca
actgaagccgatgagtttacgcaaaatttaatagaaagtggtaaaggttttatcggccaa
acattcgtcagttacgataattttgaatcacatttgaatgtattcaatgttgcttacttc
actttatttactgcgactatgcctgtgaaactaaatcatattattaaattctcttgtaaa
cctgtgcaacaatactatggtcaatacgatattatgcgctcagaatttcaacgtttcatc
caaaatgattatactattgtcattttagctgaaactgaagtgaaaaaagaaagaatacag
tctatgttaagtgaaatgcatatacctacgttcatagatggtcctaataatgacattgaa
ggtggctgcgcagtaattactgaaggtagcctatcagaaggttttgaattaccttatatg
caattggttgtagtaactgaacgtgaattgtttaagtctaaacaaaagaaaaagcgcaag
caacagaaaacaatatcaaatgctgaaaaaattaaatcatatcaagatttaaaagttagc
gactacgtggtacatgtgcatcacggagtaggacgctatttaggtgtagaaacacttgaa
gttggaggcgtgcacaaagactatatcaagctacagtataagggtactgaccaattgttt
gtacctgttgaccaaatggatcaagtacaaaaatacgttgcctctgaagataaatcacct
aaattaaataaattaggtggaactgaatggaaaaaaactaaagcaaaagtacaacaaagt
gttgaagatattgcggatgagttaattactttatataaagaacgtgaaatgtcagttggt
tatcaatatggtccagatactgctgagcaaaatgattttgaattagatttcccatacgag
ttaacagcggaccaagcgaagtctatcacagaaatcaaacaagatatggaacaacaacga
cctatggataggctgctatgcggtgatgtgggttacggtaagacagaagtagctgtacga
gctgcatttaaagcaatctacgaaggcaaacaagtcgcgtttttagtgccgacgaccatt
ttagctcaacaacattacgaaacattaattgaacgaatgcaagattttcctatagacatt
gaactgattagtcgttttagaacaacgaaggaaattaaagaaactaaagaaggattaaaa
tccggaaaagtagatattgtcgttggaacacataagttattaggtaaagatattagttat
aaagatttagggttacttatcgtagatgaagaacaacgttttggtgtacgccataaagaa
cgtattaaatctttaaaaacaaatgttgatgttctaacacttacggcaacacctatccca
cgaacgttgcatatgagtatgttaggtgtacgtgatttatctgttattgaaacgccaccg
gaaaatagatttcctgtacaaacgtatgtgctagaacaaaatacgaattttataaaagaa
gcattggaacgtgaaatatcacgtgaaggtcaagtgttctatttgtataataaagttcag
tcaatctatgaaaaacgtgaacagttacaaatgttgttaccagatgcaaatattggtgta
gcacatggtcaaatgaccgaacgagatttggaagaaacgatgttaggctttattaatcat
gaatatgatgtgttagtgacgacgacaattattgaaacaggcgttgatgtacctaatgct
aatactttaataatcgaagaggctgatcgtttcggtttaagtcaactttatcaattacgt
ggtagggtaggacgctctagtcgtataggttacgcttatttcttacatccaacgaataaa
gttttaacagaaactgctgaagaaagattacaagctattaaagagtttacagagcttggt
tcaggatttaaaattgcaatgcgcgatttgaatattcgtggtgctggtaatttacttgga
aagcaacaacatggattcattgactctgttggctttgacttatattcacaaatgttagaa
gaggcagttaatgaaaaacgtggtattaaacctgaaagtgaagaagcgccagaagtagaa
atagagttaaatattgatgcatatctaccagcagaatatattcaaaatgaacaagcgaaa
attgagatctataaaaaattacggaaaattgaaagcgaaacacagttaatagatgttaaa
gacgaattgttagatcgttttaatgaatatccaatagaagttgaacgcttgttagatatg
atggagattaaagtacatgcattacatgtaggtgtgacttcaattaaagataaagggaaa
cagatagaaatttatctgtcagaaaaagctacacaagatattaatggcgaaacattattt
aagcaaactcaaccattaggtcgtgcaatgaaagtcggcgtacaagatggtaaaatgaaa
gtaacgttaacgaaagcgaaacaatggtttgaaaacctgaaatttttagcgaaatgttta
gaagaaagtatggtaatagaggatgcgaattaa
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