Streptomyces armeniacus: DVA86_10935
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Entry
DVA86_10935 CDS
T10140
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sarm Streptomyces armeniacus
Brite
KEGG Orthology (KO) [BR:
sarm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sarm03016
]
DVA86_10935
Enzymes [BR:
sarm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DVA86_10935
Transfer RNA biogenesis [BR:
sarm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DVA86_10935
Prokaryotic type
tRNA splicing ligases
DVA86_10935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF7857
Motif
Other DBs
NCBI-ProteinID:
AXK33090
UniProt:
A0A345XN74
LinkDB
All DBs
Position
complement(2490630..2491823)
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AA seq
397 aa
AA seq
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MSYTEVPGARVPIRMWADPATVEDGAMQQLRNVSTLPWIKGLAVMPDVHYGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVKTSLTENDLPGDLSRLRSKIEQAIPVGRGMHDAPVDPA
RLHGFPTAGWDDFWSRFDGVAESVKFRQERATKQMGTLGSGNHFCEVCIDTSGSVWLMLH
SGSRNIGKELAEHHIGVARDLPHNQGLVDRDLAVFVADTPQMAAYRHDLFWAQEYARNNR
AIMMGLLQDVVRKEFRKAKPAFESVISCHHNYVAEERYDGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVKGLGNADAFHSASHGAGRRMSRNAAKKRFSARDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVIDRQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacacggaagtgcccggtgcccgggtgccgatccggatgtgggccgacccggcc
acggtggaagacggcgcgatgcagcagctgcgcaacgtctccacgctcccctggatcaag
ggcctcgcggtcatgcccgacgtgcactacggcaagggtgcgacggtcggttccgtcatc
gcgatgcacggggcggtctgcccggcggcggtcggcgtcgacatcggctgcggcatgtcc
gccgtcaagacctcgctgacggagaacgacctgccgggcgacctctcccggctgcgctcc
aagatcgagcaggcgatcccggtgggccgcggcatgcacgacgcacccgtggacccggcc
cggctgcacggcttcccgaccgcgggctgggacgacttctggtcgcgcttcgacggggtg
gccgagtcggtgaagttccgtcaggagcgggcgacaaagcagatgggcacgctcggctcg
ggcaaccacttctgcgaggtatgcattgatacgtccggttctgtgtggctgatgctgcac
tccggctcgcggaacatcggcaaggagctcgccgagcaccacatcggcgtcgcccgtgac
ctgccgcacaaccagggcctcgtagaccgcgacctcgccgtcttcgtggcggacaccccg
cagatggcggcgtaccggcacgacctgttctgggcgcaggagtacgccaggaacaaccgg
gcgatcatgatggggctgctccaggacgtcgtacgcaaggagttcaggaaggccaagccg
gcgttcgagtccgtgatctcctgccaccacaactacgtggcggaggagcggtacgacggg
atggacctgctcgtcacccgcaagggcgccattcgcgcgggcagcggcgactacggcatc
atccccggctcgatgggcacgggctcgtacatcgtcaagggcctgggcaacgccgacgcc
ttccactccgcctcgcacggcgcgggccggcggatgagccgcaacgccgcgaagaagcgg
ttctcggcccgcgacctggaggagcagacgcggggcgtcgagtgccgcaaggactcgggc
gtggtggatgaaatcccgggcgcgtacaagcccatcgagcaggtcatcgaccggcagcgg
gacctggtcgaggtcgtcgcgaagctgaagcaggtcgtctgcgtgaagggctga
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