Streptomyces armeniacus: DVA86_24800
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Entry
DVA86_24800 CDS
T10140
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sarm Streptomyces armeniacus
Pathway
sarm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVA86_24800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarm03019
]
DVA86_24800
Messenger RNA biogenesis [BR:
sarm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DVA86_24800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AXK35385
UniProt:
A0A345XUR9
LinkDB
All DBs
Position
complement(5658080..5659765)
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AA seq
561 aa
AA seq
DB search
MSHPHPELGSPPQLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGV
DLILPDFSSVRDRLDDIDGIVLTHGHEDHIGGIPYLLREKADIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVREDHRERIGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDGRLTDLRAFARLGEEGIDLLLSDSTNAEVPGFVPPERDISQVLRQVFDSAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLRVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICQPKNLMPVHGEWRHLRANAELGALTGVPRE
RVVIAEDGVVVDLVQGMAKIVGKVQAGYVYVDGLSVGDVTESSLKDRRILGDEGIISVFV
VVDSSTGKIVGGPHVQSRGSGIDESDFSAVIPKIDEALAKSAQDGISEPHQLQQLVRRSV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcccgagctcggctcaccgccgcagctccccgagggcggcctgcgt
gtcaccccgctcggcggcctgggcgaaatcggccgcaacatgacggtgttcgagtacggc
gggagactgctgatcgtcgactgcggcgtcctcttccccgaagaggaacagcccggcgtc
gacctgatcctcccggacttcagctccgtacgggaccgtctcgacgacatcgacggcatc
gtgctgacgcacggccacgaggaccacatcggcggaatcccgtacctgctccgcgagaag
gcggacatcccgctgatcggctccaagctcacgctggcactcatcgaggccaagctgcag
gagcaccgcatccgcccgtacacgctggaggtccgcgaggaccaccgtgagcgcatcggg
ccgttcgactgcgagttcgtcgcggtcaaccactccatccccgacgcgctggccgtcgcc
atccgcactcccgcgggcatggtcgtgcacacgggcgacttcaagatggaccagctgccg
ctcgacggccggctgacggacctgcgcgccttcgcgcggctcggcgaagagggcatcgac
ctgctgctctccgactcgaccaacgccgaggtgccgggcttcgtcccgcccgagcgggac
atctcgcaggtgctgcggcaggtcttcgacagcgcgcagaagcgcatcatcgtcgcgagc
ttcgcctcgcacgtgcaccgcatccagcagatcctcgacgcggcgcacgagtacgggcgc
cgcgtcgctttcgtcggacgctcgatggtgcggaacatgggcatcgcccgcgatctcggt
tatctacgggtcccggccgggcttgtcgtggacgtcaagacgctcgacgacctgccggac
gacgaggtggtgctggtctgcaccggctcgcagggcgagcccatggcggcgctgtcccgg
atggcgaaccgggaccatcagatccgtatcgtccccggcgacacggtgatcctggcgtcc
tcgctgatccccggcaacgagaacgcggtctaccgcgtcatcaacgggctcacccggtgg
ggcgccaacgtggtccacaagggcaacgccaaggtccatgtctccggccacgcttcggcg
ggcgagctgctgtacttctacaacatctgccagccgaagaacctgatgcccgtgcacggc
gaatggcgccacctccgcgcgaacgccgaactcggcgccctcaccggcgtaccgcgagaa
cgtgtcgtcatcgcggaggacggtgtggtcgtcgacctggtgcagggcatggcgaagatc
gtcggcaaggtgcaggccggttacgtgtacgtcgacgggctgtcggtcggcgacgtcacc
gagtcctcgctcaaggaccggcggattctgggggacgagggcatcatttccgtcttcgtc
gtcgtggacagcagcacggggaagatcgtgggcggcccgcacgtgcagtcacgcggctcc
ggcatcgacgagtcggacttcagtgcggtcatcccgaagatcgacgaggcgctggccaag
tcggcccaggacggcatctcggagccgcaccaactccagcagctggtacggcgttcggtg
ggcaagtgggtgtctgacacctaccgccggaggccgatgatcctgcccgtggtcgtcgag
gtctga
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