Salmo salar (Atlantic salmon): 100136429
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Entry
100136429 CDS
T04363
Symbol
vtgr
Name
(RefSeq) very low-density lipoprotein receptor
KO
K20053
very low-density lipoprotein receptor
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
100136429 (vtgr)
Membrane trafficking [BR:
sasa04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
100136429 (vtgr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
EGF_CA
cEGF
SGL
Endonuc-BglII
Motif
Other DBs
NCBI-GeneID:
100136429
NCBI-ProteinID:
XP_013984470
UniProt:
A0A1S3L0W9
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Position
ssa01:117157127..117173220
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AA seq
863 aa
AA seq
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MVTSILGLLILPICLQQCGFVHGSKTECEPSQFQCGNGRCIPSVWQCDGDEDCSDGSDEH
TCVRKTCAEVDFVCRNGQCVPKRWHCDGEPDCEDGSDESVEVCHTRTCRVNEFSCGAGST
QCIPVFWKCDGEKDCDNGEDEINCGNITCASLEFTCASGRCISRNFVCNGEDDCGDGSDE
QECAPSSCGPSEFQCGNATCIPGSWVCDDDVDCQDQSDESPQRCGRHPTPPAKCSPSETQ
CGSGECIHRKWRCDGDADCKDGSDEANCSVRTCRPDQFKCEDGNCIHGSRQCNSLRDCAD
GTDELNCKNLTQCNGPDRFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNLNECLLNNG
GCSHMCRDMVIGYECDCTPGLQLIDRKTCGDINECMNPGICSQICINLKGGYKCECHNSY
QMDPTTGVCKAVGTEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFTQQRLFW
ADLSQRAIFSTVLDKRDVGSHVKVIDNVQTPVGIAVDWIYKNIYWSDLGTKTIAVANFIG
TKRKVIFDSGLKEPASVAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVETDIQWPNG
ITLDLIKSRLYWVDSKLHMLSSVDLNGDNRRKVLQSPEYLAHPFAVTVFEDRVFWTDGEN
EAIYGANKFTGSDVITLASNLNEPQDIIVYHELIQLSGTNWCNEKAQNGGCAYMCLPAPQ
INKYSPKYTCVCPKDQTLASNGLHCRPVTPSAPSKDDGKALIRPTDSQEAKVSTSVHEVD
STARGSAAAWVILPVLFLAMAAAGGYLMWRNWQLKNKKSMNFDNPVYLKTTEEDLNIDIS
RHSSNIGHTYPAISVVNTEDDLS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtctattcttgggctccttatcctaccaatatgtcttcagcagtgtggtttt
gtacacggatcaaagacggaatgtgagcccagtcagttccagtgtgggaatggccgctgc
atcccgtctgtctggcagtgtgacggggatgaggactgctccgacggcagtgacgagcac
acctgtgttcgtaagacctgtgcggaggtggattttgtctgtcgcaatggccaatgcgtc
cccaagagatggcactgcgacggtgagccagactgcgaggatggctctgacgagagcgtt
gaagtttgccacaccaggacctgccgtgtgaatgagtttagctgtggggccgggtccacc
caatgcatcccagtgttctggaagtgtgatggcgagaaggactgcgacaacggcgaggat
gaaattaactgcggtaacatcacgtgcgcctcgctggagttcacctgtgcgagcggccgc
tgcatctcccgcaactttgtgtgtaacggcgaggacgactgtggcgacgggagtgacgag
caggagtgtgccccgtcgtcctgcggccccagcgagtttcaatgtggcaacgccacctgt
atccctggcagctgggtgtgcgacgacgacgtggattgccaggaccaatcggacgaatcc
cctcagcgctgtggtcgccaccccactcccccggctaaatgttcacccagcgagacgcag
tgtgggtctggggagtgcatccaccgcaagtggcgctgtgacggcgacgccgactgcaag
gacggcagtgacgaagccaactgttctgttcgtacctgcaggccagaccagttcaagtgt
gaggacggcaactgtatccacggcagcagacagtgcaacagcttgcgcgattgtgcagat
ggcaccgacgaactcaactgcaagaacttgacgcagtgcaacggccctgacaggttcaag
tgtcggagtggagagtgtatcgagatgagtaaagtgtgcaacaaggcccgggactgtcct
gactggagcgacgagcccatcaaagagtgcaacctgaacgagtgtctgctgaacaatggc
ggctgctcccacatgtgcagggacatggtgattggctacgagtgtgactgcacccctgga
ctgcagctcatagaccgtaaaacctgtggggacatcaatgagtgtatgaatcctgggatc
tgtagtcagatctgtatcaacctgaagggagggtataagtgcgagtgccacaacagttac
cagatggaccccaccacaggagtgtgcaaggctgtgggcacggagccctgtctgatcttc
actaaccggagggacatccggaagctgggtctggagaggagggagtacacgcagatcgtg
gagcagctgcggaacacggtggcactggatgcagacttcacccagcagaggctcttctgg
gctgacctgagccagagggccatcttcagcacggtgttggataagcgagatgtaggaagt
catgtgaaggtgatagataacgtccagacaccagtggggatcgcagtagactggatctac
aagaacatctactggtcagaccttggtaccaagaccatagctgtggccaacttcatcggc
accaaacgaaaagttatcttcgacagtggtttgaaagagcctgcgtccgtcgctgttgat
ccactgtctgggttcttgtactggtcagattggggtgaaccagctaagattgagaagtct
ggcatgaacggggttgacaggcaggtcctggtcgagactgatattcagtggcccaatgga
atcaccctggacctgatcaagagtagactgtattgggtggactcaaagttgcacatgctc
tctagcgtcgacctgaacggagacaaccggaggaaagtgctccagtcccccgaatacctg
gctcaccccttcgctgtcactgtgttcgaggatcgagtgttttggacagatggggagaac
gaggcaatctacggagcaaacaagttcacaggctctgatgtgattaccctggcaagcaat
ctgaacgagccacaggacatcattgtttaccacgagctaatccagctgtctgggacaaac
tggtgcaatgagaaggctcagaacggtggctgtgcctacatgtgccttccagctccacag
atcaacaaatactctcccaaatacacctgcgtgtgtccgaaagaccagacgctcgcttca
aacggccttcactgtagaccagtgaccccttcagctccatcaaaggatgatgggaaagct
ctaatacgtcccactgactcccaagaagccaaagtcagtacatccgtccatgaggtggac
tctacagctagaggatctgcagctgcctgggttatcctccctgtgttgttcctggccatg
gctgctgcgggaggttacttgatgtggcgtaactggcagctgaagaataaaaagagcatg
aactttgacaatccagtgtacctgaaaaccacagaagaagacctcaacattgatatcagc
aggcactcctccaatataggccacacctacccagcaatatcagttgtgaatacagaagat
gacttgtcataa
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