Salmo salar (Atlantic salmon): 100136586
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Entry
100136586 CDS
T04363
Symbol
hnf1a, hnf1, tcf1
Name
(RefSeq) HNF1 homeobox A
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
100136586 (hnf1a)
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
100136586 (hnf1a)
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GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
Homeobox_KN
HTH_37
Motif
Other DBs
NCBI-GeneID:
100136586
NCBI-ProteinID:
NP_001117146
UniProt:
Q91474
A0A1S2WYW7
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Position
ssa20:19523143..19530228
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AA seq
559 aa
AA seq
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MEGEERKGEAGPGPGRLSALQEQLIWALLGSGLSREVLVHALGELERERVTPGAEKGDRG
DGESSEEGEMDFPPPIFQELEALAPEEAARQRALVDQLLQEDPWRVAKLVKSYMQQHNLP
QREVVESIGLNQSHLSQHLNKGTPMKNQKRAALYSWYVRKQGEISQQFTNARHALGSGEE
QGEDVRKGRRNRFKWGPASQQILFHAYERQRNPSKEEREGLVEECNRAECLQRGVSPSQL
AGLGSNLVTEVRVYNWFANRRKEEAFRHKLALDMPYNSQSASSTNHTLSHSPEQGMKYSQ
QITCDNLGSSRGHNGDRGLGGRLASPIQLEPSHTLLETHHHKPVSGGGPLPPVSTLTSLH
SLSASPAPHHGLIMTSLPSVMSLGESSLLIGQTVPVINNVGGGFTTLQPISFQQQLHSTS
QQQLTQQFQSHMGHHHSPFMATMAQLPCHMYSKSDMSHYPPSSLLSQAMVITDSSSLGTL
TSLTTVRQILTTDPEEQTDQPIQEDSLHLQSPSPVPVSSGNLQLYPPSQSSESHPPHRLS
SSPADINSYIPAQMVSTAQ
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggagaggaaaggagaagcagggcccggccctggtcgtctgtctgctctc
caggagcagctgatctgggctctgctgggctctggactgtcccgggaggtcctggtccat
gccctgggagaactggagcgagagagggtcacccctggagcagagaagggggacaggggg
gatggcgagagttcggaggaaggagaaatggattttccacccccaatattccaggagctg
gaggccctagccccagaggaggcagccaggcagagggctctggtcgaccaactgcttcag
gaggatccatggcgcgtggcaaaactggtgaagagctacatgcagcagcataacctcccc
cagagagaggtggtcgaatccataggcctcaaccagtcccatctctcccagcacctcaac
aaaggcacgcccatgaagaaccagaaacgggctgctttgtacagctggtacgtcaggaag
cagggcgagattagccagcagtttactaatgccaggcatgcccttgggtctggagaggag
cagggagaggacgtgaggaagggacgtaggaacaggttcaaatggggacccgcctcccag
caaatcctcttccacgcctatgaacgacagaggaacccaagcaaagaggagagagaggga
ttagtggaggagtgtaacagggctgagtgtctccagaggggtgtgtctccgtcccagctg
gctggcctgggctctaacttagtgacagaggtacgagtgtacaactggttcgctaaccgc
cgcaaggaggaagccttccgccataaactggctcttgatatgccttacaacagccaatca
gcaagctccaccaaccacacgctctcacacagccctgagcaaggcatgaagtatagccag
caaatcacatgtgataatctggggtcatcgaggggtcacaatggagacagaggcttgggg
ggccgcctggccagccccattcaactggagcccagccacacactcctggaaacacaccat
cacaaaccagtatcaggtggtggccccttgcccccagtcagcaccctgacatcactgcac
agtctgtctgcctcgcctgctccccaccatggactcatcatgacctccctgcccagcgtc
atgagtctgggagagtcctctctcctcataggtcaaaccgtacctgtcatcaacaatgtg
ggaggcgggttcaccacccttcagccaatctctttccagcagcagcttcattccacttcc
cagcagcaactcacacagcagttccagagtcatatgggccaccaccacagtcctttcatg
gcaaccatggcacagcttccatgtcacatgtacagcaagtctgatatgtcccactaccct
ccgtccagcctactgtcccaagcaatggtcatcactgacagcagcagccttggaacactg
accagtctaaccacagtcagacagattctgaccacagaccctgaggagcagacagaccaa
cccatccaggaggactccctacacctgcagtccccttcacctgtgccagtttcctctggg
aatttacagctgtatcctccatctcagtctagtgaaagtcatccacctcaccgcctctcc
tcttcgccagcagacatcaactcctacattcctgcacagatggtctctaccgcacagtag
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