Salmo salar (Atlantic salmon): 100194522
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Entry
100194522 CDS
T04363
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
100194522 (ddx39b)
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100194522 (ddx39b)
Spliceosome [BR:
sasa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100194522 (ddx39b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100194522
NCBI-ProteinID:
NP_001133080
UniProt:
B5DFY0
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All DBs
Position
ssa03:complement(64019084..64026634)
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AA seq
427 aa
AA seq
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MAENDVDNELLDYEEDEEPQGAPETAAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIVVGTPGRILALIR
NKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatgacgttgacaatgagctgctggactatgaagaggacgaggagcctcag
ggagccccagagactgctgccccagcaggcaagaaggaggtgaagggctcctatgtctcc
atccacagctctggcttcagagacttcctgctcaaaccagagctgctccgcgctattgtc
gactgtggctttgagcatccgtctgaagttcaacatgagtgcatccctcaggccatcttg
ggcatggacatcctgtgccaggccaagtctggtatgggcaaaacggcagtgtttgttctt
gccacactacagcagatcgagcctgtggatggacaggtgtcagttctagtaatgtgtcac
acacgagagctggccttccagatcagcaaagagtacgagcgcttctccaagtacatgccc
acagtcaaggcagccgtgttcttcgggggcctgtctatcaagaaggatgaggatgtgctg
aagaagaactgccctcacattgtggtgggaacccctggccgaatcctggccctcatccgc
aacaagaccctcaacctaaagaacgtcaagcactttgtcctggatgagtgtgacaagatg
ctggagcagttggacatgaggcgtgacgtacaggacatcttcaggctaacaccacatgag
aagcagtgcatgatgttcagcgccaccctcagcaaggagattcgaccggtctgccgcaag
ttcatgcaggatcccatggaggtgtttgtagatgatgagaccaagctgacgctgcacggt
ctgcagcagtactactgcaagctgaaggacagcgagaagaaccgcaagctctttgacctg
cttgatgtgctggagttcaaccaggtggtgatctttgtcaagtcagtgcagcgctgtgtg
gcgctctctcagctactggtggaacaaaacttccctgccattgccatccacaggggcatg
gctcaggaggagaggctgtcccggtaccagcagttcaaggacttccaaaggcggatcttg
gtggccaccaacctgtttggccgagggatggatatcgagcgggtcaatattgtcttcaat
tacgacatgcctgaggactcggacacctacttacacagggtggcccgtgctgggaggttt
ggaaccaagggtctggctgtgacctttgtgtcagacgagaccgatgccaagactttgaat
gatgtgcaggaccgctttgaggtcaatgtggccgagctgccagaagagatcgacatctcc
acttacattgagcagtccagatga
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