Salmo salar (Atlantic salmon): 100194669
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Entry
100194669 CDS
T04363
Symbol
ddx55
Name
(RefSeq) DEAD-box helicase 55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sasa03009
]
100194669 (ddx55)
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100194669 (ddx55)
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
Pre-60S particles
Helicases
100194669 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
SBF_like
DUF1340
YbjM
HMUDK_HMUD1
Motif
Other DBs
NCBI-GeneID:
100194669
NCBI-ProteinID:
XP_013993975
UniProt:
A0A1S3LT14
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Position
ssa13:91285423..91289968
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AA seq
607 aa
AA seq
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MDNTTEGKWDSLPVKLNDGITQTLSELGFTHMTPVQSACIPLFMRNKDVAAEAVTGSGKT
LAFVIPIIEILIKREDKLKKMQVGALIVTPTRELALQISEVMGQFLQKFPQFRQILLIGG
SNPIEDVEKFKEQGANILIATPGRLEDMFRRKADGLDLALSVKFLEVLVLDEADRLLDMG
FEASLNVILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASCTQKTPA
RLCNYYTICRAEDKFNSLVAFLRQHKHEKQLVFFSTCACVEYFGRALEALIKSVTIHCIH
GKMTHKRNKIFSEFRSLKSGILVCTDVMARGIDIPEVHWVLQYDPPSCASAFVHRCGRTA
RIGNQGNAMVFLLPMEESYVTFLSINQKCPLEQMAPVSDVVDVLPKVKALALADRAMFDR
GMRAFVSTVQAYAKHECSLIFRVKDLDFVALARGFALLRMPRMPELKGKNFPDFIETTID
TDNIRYKDKQREKLRQKLLIELKEKREERAAAPKRHNDKNKAWSKQKNRKDRRRKTAAKR
NRDEGSEMDDEDMKELLKDTRLLKRLKKGQISEEDFEKQVTAGPKSQRKTAACLSEDPPS
SAGEKDE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggacaacacaactgaaggaaaatgggatagtttacccgttaaacttaacgacggtatt
acgcaaactctcagtgagcttggatttacacatatgacaccagttcagtctgcctgtatt
ccactgtttatgcgaaataaagatgtggctgccgaggctgtgactggcagtggaaagaca
ctggccttcgtgattcccatcatagagatacttataaagcgagaggacaaattgaagaaa
atgcaggttggtgctctgatcgtcacgccgaccagagagctggccctgcagatcagtgag
gtgatgggccagttcctccagaagttccctcagttcagacagattctgttgatcggaggg
agcaaccccattgaggatgtggagaagtttaaggaacagggggccaacatattgattgcc
accccggggcgtctggaggacatgttcaggaggaaggcagacggtctggacctggccttg
tcagtcaagtttctggaggtcctggtcctggatgaggctgaccgcctgctggatatgggc
tttgaggccagtctgaatgttatcctggggtacctccctaagcagcgtcgtacaggtctg
ttttcagccactcagactcaggagctggaaaagctggtgagagctggtctcaggaaccct
gtacgcatcacagtgaaggagaagggcgtggccgccagctgcacccagaaaacaccagcc
aggctctgcaactactacacaatctgcagagcggaggacaagtttaacagtctggtagcg
tttcttagacaacacaaacatgagaaacagctggtgttcttcagtacatgtgcgtgtgta
gagtactttggccgagccttggaggccctgattaagagcgtcaccatccactgcatccac
ggcaagatgacacacaaacgcaacaagatcttctcagagtttaggagcctaaagagtggt
atcctggtgtgtactgacgtcatggccagaggcattgatatcccagaagtccactgggta
ttgcagtacgacccccctagttgtgccagtgcctttgtgcaccggtgtggacggactgcg
cgcattggtaaccaaggcaacgccatggtcttcctgctccccatggaggaatcttacgtc
accttcctgtccatcaaccagaagtgtcctctggagcagatggccccagtgagtgacgtg
gtggatgttctgcccaaggtgaaggccctggctctggcagaccgagccatgttcgacagg
ggcatgagggcattcgtctccaccgtacaggcctacgccaaacacgagtgcagcctcatt
ttcagggtcaaagatctggactttgttgcgctggcccgtggcttcgccctcctccgcatg
cccaggatgcccgagctgaaagggaagaacttccctgacttcatagaaacgaccatagac
acagacaacatccgctacaaggacaagcagcgggagaagctgaggcagaagctgctgatt
gagctgaaggagaagagggaggaaagggctgctgcccccaagagacacaatgataagaac
aaagcctggtccaaacagaagaacaggaaggaccgcaggaggaagactgctgccaagagg
aaccgggatgagggctcggaaatggacgatgaggacatgaaggagctgttgaaagacact
cgtctcctgaagagattgaagaagggacagatcagcgaggaggactttgagaaacaggtg
acagcaggaccgaagagccagaggaagacagcagcatgcctctcagaggatccacccagc
tcagctggagagaaggacgaatga
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