Salmo salar (Atlantic salmon): 100194729
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Entry
100194729 CDS
T04363
Name
(RefSeq) zinc finger SWIM domain-containing protein 8
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sasa04121
]
100194729
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
100194729
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
100194729
NCBI-ProteinID:
XP_014010015
UniProt:
A0A1S3N3V7
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Position
ssa18:15016068..15060281
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AA seq
1982 aa
AA seq
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MDVMELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVK
IKDGQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLA
NGSPDEFQRGEQLYRMRAVKDPLQIGFHLSATVVSPQAGQSKGAYNVAVMFDRCRITSCS
CTCGAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQI
LPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCG
PSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMLKRRDSNAAP
LLEILTEQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLW
RLAVLDPTMSPHRRLELAAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWE
VAYPLPGITYCSADKKSASFCWARAVQQQRGAKAGLAGDPPEPGGGRSGSSEGGGGDYKG
RSPQQEVAVRPKETIVSKRKGLSAGGGGGVLVRLGGSVSLSLEEGSSKGMYKGAGSSSST
GGKAKIAQGGKSSSGGSGVVGGKHQAAKRRTSSEDSSLEPDMAELSLDDGSSLALGAEAS
NTFDFTPPPPEMLPSPSPLLREPHKYSGGGKVAGNTPKERAFEGKRVTLAATLPSAEAQP
AFPTKENAAVIVEAAIAVVNVEAEMNGNEEAAIAGDVRPSTSVVTVTAAAAKSPRDGRRE
TGTGAVALPNQAPEAAAEAGAGGDPVGEDDYQAYFLNSANEEGVERVSENNNEEEPDIFA
GIKPLEQEGQMEVLFACAEALHAHGYSNDACRLAVELAGDLLANPPDLKVEQPQTKGKKS
KVSTSRQTQVATNTLVKTSFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKALEVKLA
YQESEVVALLKKIPLGLVEMTSIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVCT
VVSPTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLAL
ALMITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAANSQRSPSKHAAHTAHGH
GGATGGVSKHAPNATAAAGSSSSLQAVAAGGAAGQQAGLAGSGVQNNSTAGECVSEAREQ
ADGVQPASCDQPSEAAPFKPEGTVPSRLALGGRGAYSGRCWGSPVRQKKKHTGMASIDSS
APETTSDSSPTLSRRPLRGGWAAASWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARA
KSTDTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGG
HQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVEC
WDGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQVH
VRYSSVLQKTHRTTHDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGGS
GAQREGPGRCGANGGAGRRPPETGHGVMDNIGNMDSSGVATVTASVTAAAVVPVISVGST
IYQSHALPGSAMAHPHTQGLHPYTTIQAHLPTVCTPQYLGHPLQHVPRPTVFPVSGGAYP
QCVCVPSQGMHPAFIGAQYPFSVATGPHPPMAATAVTFPGVPVPSMTQIAVHPYHTETGL
PLSTTVAGAASFSPFYPVGGVHSGATIQAIQGSSLPGMSSQPVSLVSAPFPSEDEQHSQP
ISQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYV
YQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHR
LIHLTPADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATF
SP
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atggatgtaatggaactaatgttcgccgagtgggaagacggagagaggttctccttcgaa
gattctgaccggttcgaggaggactcgctctgctccttcatatcagaggctgagagtctg
tgtcagaactggaggggatggagaaaacagtctgctggaccaaattctcctacagtgaag
attaaagatggtcaggtcatccctctggtggagctatcagccaagcaggtggcattccac
atcccgtttgaggtggtggagaaggtctaccctcctgtccccgagcagctgcagctccgc
attgcctactggagcttcccagagaacgaggaggacatccggctgtactcgtgtctggct
aacggcagccctgatgagttccagcgaggggagcagctgtacaggatgagggctgtaaaa
gaccctctgcagataggtttccacctcagtgccaccgtggtgtcgccccaggctggccaa
tcaaaaggggcgtacaatgtggctgtcatgttcgaccgctgccgcatcacttcctgcagt
tgcacctgtggagccggggccaagtggtgcgcccatgtggtggccctctgcctcttcagg
atccacaacgcgtctgcagtgtgcttgcgagcccccgtgtcagagtccctgtcccggctg
cagagggaccagctgcagaagtttgcccagtacctcataagtgagcttccccaacagatt
ttgcccacagcccagaggctcctggatgagctcctgtcctcccagtccacagccatcaac
acagtgtgtggggctcccgaccccactgctggcccctcagcctctgatcagagcacctgg
tatctagatgagtctacgctcagtgacaacatcaagaagactctgcacaagttctgtggc
ccctctcctgttgtcttcagtgacgtcaactccatgtacctgtcatccacggagcctccg
gcggcggcagagtgggcgtgtctgctgaggccgctgagggggcgggagcccgaggggatc
tggaacctcctgtccatcgtcagggagatgctcaaaaggagagacagcaacgctgcaccc
ctactagagatcctcactgagcagtgtctcacttatgaacagatcattggctggtggtac
agcgtgcgtacatcggcatcccacagcagtgccagcgggcacacggggcgcagcaatggg
cagtcggaggtggccgcccacgcctgcgccagcatgtgtgatgagatggtcgttctgtgg
aggctggctgtcttagaccccaccatgagccctcataggcgtttggagctggctgcccag
ctcaagcagtggcatctgaaagtgattgagatcgtgaagcgaggacaacaccgcaagtcc
ctggacaaactgttccagggcttcaagccagccgtggagtcctgctacttcaactgggag
gtggcctacccactgccaggcatcacctactgcagtgcagacaagaagagcgcttccttc
tgctgggccagggcagtgcagcagcagagaggggccaaggctggcctggctggagacccc
cctgaacctggaggagggagatctggcagctctgagggaggtgggggagactacaagggc
agaagtccccaacaagaagtggcggtcaggcccaaagagaccatcgtgagcaagaggaag
gggttgtcggccgggggcggaggaggggtcctagtgcggctagggggcagtgtgtctctc
tctctagaggagggcagtagtaaggggatgtacaaaggcgcaggttcctcctcgtccact
gggggcaaggctaagatagcacaggggggcaagtcgtcctctgggggatcaggagtggta
gggggaaaacaccaagcagccaagcggcgcaccagcagtgaggacagctccctcgagcct
gacatggccgagctgagcctggatgatggctccagtctggcgctgggcgctgaggccagc
aacacctttgacttcacgcccccgccgcccgagatgctgccctcaccaagcccgctactc
agagagccacacaaatacagtgggggagggaaagtggccggaaacacgcccaaggagcgc
gccttcgagggcaaacgggtcacccttgctgccaccctaccttccgctgaggcccagccc
gccttccccaccaaagagaacgctgctgtcatcgtggaagcagccattgccgtggtgaat
gtggaggcggagatgaatggaaatgaggaggcggccatcgctggagacgttcggccctcc
acctcggttgttaccgtgactgcagctgccgccaagtcaccgcgtgatggccgccgagaa
actggcactggagctgtagccctgcccaatcaggccccagaggcagcagcagaagcaggg
gcgggaggagaccctgtaggagaggatgactaccaggcctactttctgaattcagctaat
gaggagggtgtagagagagtgtcggagaacaacaatgaggaggaaccagacatctttgct
gggatcaagccactggagcaggagggccagatggaggtgctgtttgcatgtgcagaggcc
ctccacgctcacggctacagcaacgatgcctgcagactggcagtggagctggctggagac
ctgctggccaaccctccagacctgaaggtggagcagccccagaccaagggcaagaagagc
aaggtgtccaccagcaggcagacccaggtggccacaaacaccctggttaagacctctttc
ttgctgacggtgctgagcgagaggctggagcttcacaacctggccttcagcacgggtatg
ttctctctggagctgcagaggcccccagcctccaccaaggccctggaggtcaagcttgcc
taccaggagtcagaggtggtggctctgctgaagaaaatccctctgggcctggtggagatg
acgtccatacgggacagggccgagcagctccgagacgggaacttctgtgactacaggccc
gtcctgcccctcatgctggccagcttcatatttgatgtgctgtgtaccccagtttgtaca
gttgtgtcccccacaggttcccgtccgcctagccgtaaccggaacaacgagatgcctgga
gacgaggagctgggctttgaggcggctgtagcagcactgggtatgaagaccacagtgagc
gaggcagagcatcctctgctgtgtgaggggaccaggagagagaaaggagatttggctctg
gccctcatgatcacatacaaggatgaccagagcaagctgaaaaagatcctggacaagctg
ctggacagagagagccagacccacaagccccagaccctgagctccttctactccagcaag
ccagctgccaacagccaaaggagcccgtccaagcacgctgcccacactgctcacggacac
ggaggtgccaccggaggggtgtccaaacatgcccccaacgccacagctgcagccgggtcc
tcctcctccttgcaagcggtggctgctgggggggcggcaggacagcaggcgggtctggcg
ggcagtggagtgcagaacaactccacagccggagagtgtgtcagtgaggccagagagcaa
gcagacggcgtccagcctgcgtcatgtgaccagccgagcgaggctgccccattcaagcca
gagggcacagtgcccagccgcttggcgctgggaggacggggggcatacagcgggcgctgc
tggggctctcctgtccgccagaagaagaaacacacaggcatggcgagtatcgacagcagt
gctcctgagaccacctcagacagctcccccacccttagtcgacgcccactcagagggggc
tgggccgcagcctcctgggggaggggccaagacagtgacagcatcagcagctcctcttct
gattcgctaggctcctcctcatccagtggctctcgcagggccggaggcggagctagggca
aagagcacagacaccagcaggtataaagggcgtcgtcccgagtgccatgcaccccatgtg
cccaaccaaccgtcagaggcggcggcccacttctacttcgagttggccaagacggtgctg
atcaaagccgggggcaacagctccacctccatcttcacccagccctcagccagtggaggc
caccaggggccccaccgcaacttgcacctctgtgcctttgagatcggcctgtatgccctc
ggcctgcacaactttgtctcacctaactggctctccaggacctactcctcccacgtctcc
tggatcacaggccaggccatggagatcggcagtgctgccctcaacatcctggtggaatgc
tgggacgggcacctcacccctcccgaggtggcatcactggccgacagagcatcacgggcg
cgggaccccaacatggttcgcgctgcggctgagctggccctaagctgcctgccccatgca
cacgccctcaaccccaatgagatccagagggccctggtgcagtgcaaggaacaggtacat
gtccggtactcttcagttctgcagaagacacatcggactactcatgacaacgtgatgcta
gagaaagcctgtatggctgtagaggaggcagccaaggggggcggtgtgtaccctgaggtt
ctgtttgaggtggcccaccagtggtactggctctatgagcagacagtaggagggggctca
ggggcccagcgtgaaggcccgggacgctgtggggccaacggtggagctggaaggaggccc
ccagagacgggccatggtgtaatggacaacattggcaacatggattcctctggcgtcgcc
acggtgacggcctcagtgacagcagcggctgtggtgcccgtcatctctgtgggctccacc
atctaccaatcacatgcccttcccggctcggccatggcccacccccacacccagggcctg
cacccctacaccaccatccaggcccacctacccactgtctgcaccccccagtacctgggg
cacccactgcagcacgtaccccggcccactgtattccccgtgtcagggggtgcctaccca
cagtgtgtctgtgtgccctctcagggaatgcacccggcctttatcggtgcccagtacccg
ttctcagtggccactggcccccatccgcccatggcagcgacagcggtaaccttccccggt
gttcccgtgccgtccatgacccagatcgccgtccacccctatcacacggagaccggcctg
cctcttagcaccactgtagcaggagccgcatctttttcccctttctatccagtaggtggc
gtccattcaggcgccacaatccaggccattcaggggtcatctcttcctggaatgtcttct
cagcctgtctcattggtcagtgcccccttcccgtctgaagacgagcagcatagccagcca
atcagccagcagggccttcactacctgcactcagcatacagagttggcatgctagctttg
gagatgcttggcaggagggctcacaacgaccaccccaataacttctcccgcagcccccca
tacacagaggacgtcaagtggctcctgggcctggctgcacggctaggggtgaactacgtg
taccagttctgtgtgggtgcggctaagggcgtgctcagccccttcgtccttcaggagatc
atcatggaggctctccagagactgaaccccgcccacatccatgcccacctccgcacgcct
gccttccaccaactggtgcagcgctgccagcaggcctacctacagtacatccaccaccgg
ctgatccacctgaccccggccgactacgacgactttgtcaacatcatccgcagcgcccgc
ggggccttctgcctgacccctgtgggcatgatgcagttcaacgacgtgctgcagaacctg
aagaggggcaagcagaccaaggagctgtggcagcggatctctctggagatggccaccttc
tccccatga
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