Salmo salar (Atlantic salmon): 100194832
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Entry
100194832 CDS
T04363
Symbol
smg9, cs061
Name
(RefSeq) SMG9, nonsense mediated mRNA decay factor
KO
K18735
protein SMG9
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100194832 (smg9)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100194832 (smg9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
AAA_16
ABC_tran
AAA_30
DUF6079
AAA_18
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
100194832
NCBI-ProteinID:
NP_001133333
UniProt:
B5X165
A0A1S3RYF4
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All DBs
Position
ssa05:complement(67005694..67012260)
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AA seq
505 aa
AA seq
DB search
MSESGHSQPGMYGQGRRRRRRRDRDVGPPGQNLSGPSRDREYVPRERRDGSEEPPGPLLQ
KTPIILAKPPGERSKPSQSVPIGGGQALEKPIMLIKSREDGGKPGTPPEVASPCSGASKL
EREGQRPTQPVYQIQNRGMGAAASSGAVDPVIGQTKLVPPEKMKHSIKLVDDQMNWCDSA
MEYLRDQTDMLVVGVIGLQGTGKSTIMSLLSANAPEEDQRGYVFRAQTQEIKERGGNQST
GIDFYITQERVIFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQITAFLFTV
CHVVIVIQDWFTDINLYRFLQTAEMLKPSTPSASHDSTGSSGNEEGSEYYPHIVFLQNKS
SRDEFCPRNLKKMHMAVDKLMAHSHLKYKGTLSMLDCNIFPGLDRDYLETEVNMFLLPLM
ENEGEDALTKAGSGSAPLFSLLPGYRGHPTFSSQVSKLRSQILAMSRCQLSHTILTEKNW
FHYAARIWDGVKKSSALSEYSRLQA
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatctggccacagtcaacctggcatgtacggacagggaaggaggagaaggcga
cgccgagacagggatgtgggtcccccggggcaaaacctctctggtcccagtcgagatcgg
gaatatgtccccagagaacgcagggatggcagtgaggagcctccaggaccactccttcag
aagacccccatcatcctggccaaaccccctggagaacggtccaagccttcccagagtgta
cccatcggtggaggccaggccctggagaagcccatcatgctcatcaagtccagggaggac
ggggggaaaccagggacccctcctgaggtggcttctccatgttctggggcctcaaagcta
gagagggagggccagcgccctactcaacctgtctaccagatccaaaacagaggcatggga
gcagctgcttccagcggtgctgtggaccctgtgattggccagaccaagcttgtcccccct
gagaagatgaagcacagcatcaagctggtggacgatcagatgaactggtgtgacagcgcc
atggagtacctaagggaccagacagacatgttggtagtgggagtcattggcctgcaggga
acagggaaatccaccatcatgtctctcctgtctgccaacgcacctgaagaagaccaaagg
ggctatgtgttcagggcccagactcaggagatcaaagagagaggagggaaccagagcact
ggtattgacttctacattacccaggaaagagtcatcttcttggacacacagcccattctc
agcccctccattttggatcacctcatcaacaacgaccgcaagctgcctccagagtacaac
ctccctcacacctatgtggagatgcagtctcttcagatcactgctttcctgttcacagtg
tgccacgtggtcattgtgattcaagactggttcactgacatcaacctctacaggttcctc
cagacagcagagatgttgaagccctccaccccctcagccagccacgacagcactggttcc
tctggcaacgaagagggatcagagtactaccctcacatagtgttcctgcagaacaaatct
agtcgtgatgagttctgtcccagaaacctgaagaagatgcatatggcagtggacaagctg
atggcccactcccatctgaaatacaaaggcacattgtccatgctggactgtaatattttc
cctggcctggaccgcgactacctggaaacagaggttaacatgttcctgttgcccctcatg
gagaatgagggggaggacgcgctaaccaaagcagggtctgggtctgcccctctcttctct
ctcctcccgggctacagaggacaccctaccttctcctctcaggtctccaagctccgcagc
caaatcctggccatgtcccgctgtcagctgtcacacaccatcctaacagagaagaactgg
tttcactatgcagctcgtatctgggacggggtgaagaagtcctcagccctgtctgaatac
agccgtctacaggcctag
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