Salmo salar (Atlantic salmon): 100194897
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Entry
100194897 CDS
T04363
Symbol
uap56
Name
(RefSeq) Spliceosome RNA helicase BAT1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100194897 (uap56)
09122 Translation
03013 Nucleocytoplasmic transport
100194897 (uap56)
03015 mRNA surveillance pathway
100194897 (uap56)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100194897 (uap56)
03041 Spliceosome [BR:
sasa03041
]
100194897 (uap56)
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100194897 (uap56)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100194897 (uap56)
Spliceosome [BR:
sasa03041
]
Complex C
Other components
EJC/TREX
100194897 (uap56)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100194897 (uap56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
100194897
NCBI-ProteinID:
NP_001133398
UniProt:
B5X1H9
LinkDB
All DBs
Position
ssa27:complement(36926312..36942394)
Genome browser
AA seq
428 aa
AA seq
DB search
MTEQDVENELLDYEEDDVVGDLSGGDILSIKKERVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECPHVVVGTPGRILALI
RNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
VALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISELPDEIDI
SSYIEPTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcaggatgtggagaatgagctcttggactacgaggaggatgatgtggtggga
gatctatcaggaggggatattctgtccattaaaaaggagcgtgtgaagggctcctatgtg
tccatccattcgtctgggtttagagacttcctgttgaagcctgagctgctgagggcgatc
gtggactgtggctttgagcatccctctgaggttcaacatgagtgcatccctcaggcgatc
ctgggtatggatgtgctgtgccaggctaagtctggtatgggcaagacggccgtgtttgtc
ctggccaccctacagcagctggagcctgtcactggacaagtgtcagtgctggtgatgtgc
cacacccgagagctggcgtttcagatcagcaaggagtatgagagattctccaagtacatg
ccgactatcaaggtggcagtgttctttggtggcctgtctataaagaaggatgaggaggtg
ttgaagaaggagtgtccccatgtggtggtggggacgccggggcgaatcctggccctgatc
cgcaacaagaccctcaacctgcgacacatcaaacacttcatcctggacgagtgtgacaaa
atgttagaacaacttgacatgcgcagagacgtccaggagatattccgtctgaccccccat
gagaaacaggtcatgatgttcagcgccaccctgagcaaagagattcgccccgtctgccga
aagttcatgcaagatccgatggaaatctttgttgatgatgagaccaagctgactctccac
gggctgcagcagtactacgtcaaactgaaggacaatgagaagaataggaagctctttgat
ctcctcgacgtgctggaattcaaccaggtggtgatctttgtgaagtccgttcagcgctgt
gttgctctggcccagctgttggttgagcagaacttcccggctattgccatccaccgcggg
atgcctcaggaggaacgtctctctcgttaccaacaatttaaagacttccagagacgtatc
ctggtggcaaccaacctgtttggcagagggatggatatcgagagggtcaacatcgccttc
aactacgacatgccagaagactctgacacgtacctgcacagggttgccagggcgggcagg
tttggcaccaaaggcctggccatcacatttgtgtctgatgagacggatgcccgtacactt
aacgacgtccaggaccgattcgaggtgaacatcagtgagctgcccgacgagatcgacatc
tcatcttacattgaaccaacccggtaa
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