Salmo salar (Atlantic salmon): 100194993
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Entry
100194993 CDS
T04363
Symbol
hif1a
Name
(RefSeq) Hypoxia-inducible factor 1 alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04137
Mitophagy - animal
sasa04140
Autophagy - animal
sasa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100194993 (hif1a)
04137 Mitophagy - animal
100194993 (hif1a)
04148 Efferocytosis
100194993 (hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
100194993 (hif1a)
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
100194993 (hif1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
100194993
NCBI-ProteinID:
NP_001133494
UniProt:
B5X214
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Position
ssa20:49992609..50020170
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AA seq
628 aa
AA seq
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MDTKEEPVRKRSSTDQRKVRSRDAARCRRSLETELFYKLAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSGDTSEEHVTDGDEDTVDGFYPRALAGFIMVMTEEGDMIYLGDSVSKH
LGIPQLELLGQSVYDFVHPCDQEELRDLLAPRPGVSKKKPAQQHTEMNFFLRMKSTLTSR
GRTVNIKSATWKVLHCTGHMRVCCSGEDSSPPAGSFMTVLCEPIPHPSSVEFPLDQSTFL
TRHSMDLRFTHCDGRVSELVGYEPEDLIGKSAYKFHHALDSDHVTKSLHILLSKGQVCTS
LYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLKS
DPVSEASEETLCDSDSSSSAELSLQLKENPEDLLQLAPVSGDPIVPLTDFAELSFGLPSS
PDSAPDFPQELCTPELWTLLSPIFSKLTSSPAPALIPIEELPIEDEVEKLFAVCPDESVQ
NKNQPEDVEVVDLDMLAPYISMDDDFLLSVQLPETPDSPSPEPPTATRKRSHEQDEDMPS
QLMSQDKRPRHLVSPIQHKLPLSYALLDCLEDADNPELELGPIPHRRSQLLTDRDPILGE
AQGLCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaagaagagcctgttagaaaacggtcgagtacggatcagcggaaggtgcgt
tcccgggatgcggcgcgctgcaggcggagtctggagacggagctgttctacaagttggcc
cacaccctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttccttcgcatgcaccacctccgctcaggggatacaagcgaggagcac
gtcaccgatggagacgaggacaccgtggatgggttctacccccgggcgttggcaggcttc
atcatggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcagcaaacac
ctaggcatcccacagctggagttgctgggtcagagtgtgtatgactttgtccacccatgt
gaccaagaggagctacgggatctcctggcgcctaggccaggtgtgtccaagaagaaacca
gcgcagcaacacacagagatgaacttcttccttaggatgaagagcactctgactagtaga
ggccgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccacatg
cgtgtgtgctgcagtggcgaggattcgtcacctcctgcaggaagcttcatgacagtgctg
tgtgagcccatcccccacccgtctagtgtggagttccccctggaccagagcaccttcctc
actcgacacagcatggacctgcgcttcacacactgcgatggcagggtgtcagagctagtg
ggatacgagccagaagatctgattggcaaatctgcctacaaattccatcatgccctggac
tcggatcatgtgaccaagagcctgcacatccttctgtccaaaggccaggtgtgcaccagt
ctataccgtttcctggctaagagtgggggcttcgtgtgggcagagacccaggctacagtc
atctacaacaacaagacctctcaaccagaggctgtggtctgtcttaacttcatcctcagt
gtggtggagcaggcagatgtggtgttctcagtagagcagactggctgtgggctgaagagt
gatcctgtctctgaggcctccgaggagaccttgtgtgacagtgacagcagcagcagtgca
gagctttccctccagctgaaggagaacccagaggacctcctgcaactggcccctgtctca
ggagaccccatcgtacccctcacagactttgcggagctgtcgttcggtcttccatcaagc
cctgactccgccccagatttccctcaggaactgtgcacccctgagctgtggacgctcctc
tcacccatattcagcaagctcacctcatcaccagcaccagcgctgatccccattgaggag
ctgccaatagaggacgaggtggagaagttgtttgccgtctgtccagatgagagcgtgcag
aataaaaaccagcctgaggacgtggaagtggttgatctggacatgctggctccgtatatc
tccatggatgatgatttcctgctcagcgtccagctccctgagacccctgacagcccctcc
ccagagccccccactgctaccaggaaacggagtcatgagcaggatgaagacatgccctcc
cagctgatgagtcaggacaagagaccgagacacttggtgtcccccatccagcacaaactg
cctctcagctacgccctgctggactgcctggaggatgcagacaacccagagttggagctg
gggccaatcccccacaggcggagccaactgctgacggacagagaccccatcctcggtgaa
gcccagggactatgtgacactgcagccttgatgagggacctcttcttgtcccgcccacct
gaccccctgacctcctctctgacttga
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