Salmo salar (Atlantic salmon): 100195221
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Entry
100195221 CDS
T04363
Symbol
nup54
Name
(RefSeq) nucleoporin 54
KO
K14308
nuclear pore complex protein Nup54
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100195221 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100195221 (nup54)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100195221 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
100195221
NCBI-ProteinID:
NP_001133722
UniProt:
B5X399
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All DBs
Position
ssa01:106447828..106480957
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AA seq
522 aa
AA seq
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MAFNFGGAATNPATGLAGPGFGTTTTAAAPAGFGGFGTTTTGAFGGFGTTTTSAAAPGST
FSFAAPASTTGGLFGNTQNKGFGFSSGLGTGTTAAAGFGTGLGTTLGGGFGGFNIQPQQQ
QQGSFFGQQAQAPAQSNQLVHTANALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNQ
LPPVDFTQENPFCRFKAVGYSCIPGSKDEDGLVVLAFNKKEADVRSQQQQLVESLHKVLG
GNQTLTVNVEGVKALPDDQTEVVIYVVERSPNGTSKRIPATTLYNYVEQANTKAQLTQLA
VFMSVTRTELSPAQLKQLLANAPAGVDPIIWEQAKVDNPDADKLIPVPMVGFKELLRRLK
IQDQMTKQHQSRVDIISNDISELQKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRK
SGYAIQVDEEHLRVQLDTIQCELNAPTQFKGRLNELMSQIRMQNHFGAVRAEERYSVDGD
LLREIRQHLKQQQEGLSQLISVIKDDVEDIKLIEHGLLDRLG
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaactttggcggcgctgccactaaccccgcaacaggtcttgcaggccctggt
ttcgggaccaccaccactgctgcggccccggctggcttcggcggctttggcaccaccacc
acaggtgcttttgggggttttgggacaaccactacatccgctgctgcacctgggtcaact
ttcagcttcgccgctcctgcaagcacaacaggaggactgtttggtaatacccagaataag
ggatttgggttctcctctgggctgggcactggcactactgctgcagctgggtttggaaca
ggtctggggacaactctaggaggtggatttggtggcttcaatatccagccacagcagcaa
cagcaaggaagcttttttgggcagcaggcccaggccccggcccagtctaatcagctcgtc
cacacagcaaatgccctgtctgcccccaccctgcttggggacgagagagatgccatcttg
gccaagtggaatcagctccaggccttctggggaacaggcaagggctacttcaacaaccaa
ctcccacctgtagacttcacacaggagaatcctttctgcaggttcaaggcggtgggctac
agctgtatcccaggcagtaaggatgaggatggtctggttgtcctggccttcaataagaag
gaggctgatgtccgtagccaacagcagcagctggttgagtctctacacaaggtgctggga
gggaaccagactctcaccgtcaacgtagagggagtcaaagccctgcctgatgaccagacg
gaggtggtgatctatgtggtggagcgttctcctaacggcacatctaagaggatcccagct
acaacactgtacaactatgtagagcaggctaacaccaaggcccagctcacacagctagca
gttttcatgtctgttacacgcactgagctctcaccagcacagctcaaacagctgctggcg
aatgcaccagcaggtgtggatcccatcatttgggaacaggcaaaggtggataaccctgat
gcggacaagttgatccccgtcccaatggttggtttcaaagaactactccgcagactgaag
attcaggaccagatgaccaaacagcaccaatccagagtagatatcatctctaatgacatc
agtgaactgcagaagaaccaggcaacaacagtggctaagatcgctcaatacaagaggaag
ctgatggatctctctcacagagtactacaggtgctgatcaagcaggagattcagaggaag
agtggttatgccatccaggttgatgaggagcacctaagagtgcagctggacaccatccag
tgtgaactcaacgcccccacgcagttcaaggggcgtctgaacgagctgatgtctcagatc
cggatgcagaaccactttggggcggtgcgcgcagaggaacgatatagtgtggacggagac
cttctcagagagatcagacagcacctgaagcagcagcaggagggtctgagtcagctgatc
agtgtgatcaaagacgacgtggaagacatcaaactgatagaacatggcctcttggacaga
ctcggctga
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