Salmo salar (Atlantic salmon): 100195249
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Entry
100195249 CDS
T04363
Symbol
hbs1l
Name
(RefSeq) HBS1-like (S. cerevisiae)
KO
K14416
elongation factor 1 alpha-like protein
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100195249 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100195249 (hbs1l)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100195249 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
100195249
NCBI-ProteinID:
NP_001133750
UniProt:
B5X3F5
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All DBs
Position
ssa15:17392758..17430267, ssa15:17546496..17580367
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AA seq
708 aa
AA seq
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MSRHRNVRGYNYDEDLDDDDMYGQSVDDDYCISPATAAQFIYSSRQERPNVEPPLEEEEM
EEAIPTSPTLTHNLNPLDQGKLYSCLDQMRAVLGDAVPESVLTQAALRCAFDPQRALDAV
LSDESAGLPAPLDARTNNDAPLPQRANKETAVVPRANQEASAAPRPEKAKGREAGKCQLD
SEVLPKVARMTVSGKKQTMGFDVPSTEENGVVPSPSVHRGGSPDDMTAKTSPDTPSKRPE
TPSKGFGGAEEPPTVPTPGRTPGKAKQQLNVRAELEKRQGGKSLLNLVVIGHVDAGKSTL
MGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERNRGVTMDVGMTKFETA
SKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSL
GVTQLAVAVNKMDQVNWQQERFKEIISKLGHFLKQAGFKDSDVFYVPTSGLSGENLTTKS
SALMLTSWYSGPCLLEQIDYFKPPQRSIEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQT
GDRVLAMPPNETCTVKGITLHDEPLDWAAAGDHVSLTVTGMDIIKINVGCVFCDIKEPIR
ACSRFRARVLLFNIEVPITQGFPVVLHYQTISEPATIRKLVSVLHKSSGEVLKKKPKCLG
KGMNAMVEIQTQRPVALELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacagaaatgtccgaggatacaactatgatgaagaccttgacgatgacgac
atgtatggacagtctgttgatgatgactactgtatctctcctgctacagcggcccagttc
atctactccagcaggcaggagaggcccaacgttgagcctcccctagaggaagaggagatg
gaggaggccatacccacctctcccaccctcacacacaacctcaaccccctggaccaaggc
aaattgtactcgtgtctggaccagatgcgtgcggtgctgggtgatgccgtgccagagtcg
gtccttacccaggctgccttgcggtgcgccttcgaccctcagagagccttggatgccgtt
ctatcagacgagagcgccgggctgccggcccccctggacgccagaaccaataacgacgca
ccactgccgcagagagcgaataaggagacggcagttgtaccaagagccaatcaggaagcc
tcagctgcaccgcgaccagagaaagctaagggccgtgaggcggggaaatgtcaactggac
tcagaggttctgcctaaagtggcccgcatgaccgtctcggggaagaaacagaccatgggc
tttgacgtgccgagtacagaggagaacggggttgtccccagcccctccgtgcatcgcgga
ggtagccctgatgacatgaccgcgaaaaccagccctgacactccctccaagcggccggag
acaccctctaaagggttcgggggggccgaggagccccctactgtccccaccccaggacgt
accccggggaaggccaagcaacagctgaacgtcagggcagagctggagaagagacaaggg
ggcaagtctctactcaacctggtggttataggtcatgtggatgctgggaagagcactctg
atgggtcacctgctgtacctgttgggaaacgtcaataaacgcaccatgcacaagtacgaa
caggagtccaagaaggccggcaaggcctcgttcgcctacgcatgggttctggatgagacc
ggagaggagaggaacaggggtgtaaccatggatgtggggatgaccaagtttgagacggcc
tctaaggtggtgactctgatggacgctcctggacacaaagacttcatccctaacatgatc
accggagcggcccaggcggacgtggcggtgttagtggttgatgccagcagaggtgagttt
gaggcagggttcgaggcgggtggtcagacgcgagagcacggccttctggtccgttcgttg
ggcgtcacgcagctcgctgttgccgtcaacaagatggaccaggtaaactggcaacaggag
cgattcaaagagatcatctccaaacttggacatttcctgaaacaggctggatttaaggac
tctgatgtgttctacgtgccgaccagtggcctatcaggagagaacctgaccactaagagt
tctgctctgatgctaacatcctggtactctggaccctgtctgctggaacagatcgattat
ttcaaaccaccccagaggtcgatagaaaagcccttccgactgtgtgtctcggacgtcttc
aaagatcaaggctcagggttctgtgtaacagggaagatcgaggcgggctacattcagaca
ggagacagagtactggccatgccccccaatgagacatgcactgttaaaggcatcactctc
cacgatgagcctctggactgggcagcagcaggagatcatgtcagtctgaccgtcactggc
atggacatcatcaagattaatgtgggctgtgtgttctgtgatattaaggagccaatcaga
gcgtgttcccgcttcagggccagagtcctgctcttcaacatagaggtccccatcacacag
ggcttccccgttgtgttgcactaccagacgatcagtgaacctgccaccattaggaagctt
gtcagtgttctgcacaagagcagcggggaggtgctcaagaagaaaccaaagtgtctgggt
aagggtatgaacgcgatggtggagatccagacccagaggcccgtggcgttggagctttat
aaggacttcaaggaactgggacgcttcatgctgagatacgtagggtcaaccatcgctgcc
ggggtcgtcaccgagatcaaagaatga
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