Salmo salar (Atlantic salmon): 100195256
Help
Entry
100195256 CDS
T04363
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting 41 homolog (S. cerevisiae)
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04140
Autophagy - animal
sasa04148
Efferocytosis
sasa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100195256 (vps41)
04148 Efferocytosis
100195256 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100195256 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
100195256 (vps41)
Membrane trafficking [BR:
sasa04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100195256 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
TPR_7
Helicase_PWI
Motif
Other DBs
NCBI-GeneID:
100195256
NCBI-ProteinID:
NP_001133757
UniProt:
B5X3G5
LinkDB
All DBs
Position
ssa19:complement(30275732..30306018)
Genome browser
AA seq
665 aa
AA seq
DB search
MAEVEKGRKPSEESTDDSEEEDSEEEPKLKYERLANGVTEILQKDAASCMTVHDKFLALG
THFGKVFLLDIQGNLTQKFEISPVKINQISLDESGEHMGICSEDGKVQVFGLYTREGFHE
NFDCPVKVVALHPRFSSSNYKQFVTGGNKLLLYEKNWLNRWKTSTLHEGEGTITNVQWRA
NLIAWANNMGVKIYDISTKQRITNVLRDNVSLRPDMYPCSLCWKDNSTLIIGWGSSIKIC
VVKERGHTELRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYFVKENSDHMEEEFRAR
PCLDIIQPLPEGYEEISSDALTVRNFQENECRDYRLEHSQGESLYYIISPKDIVVAKERD
QDDHIDWLLDKKKYEEALMAAEISFKNIKRHEVQKIGMAYINHLVEKGDYDTAARKCQKV
LGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKSDYEGFATLIR
EWPGELYNNMTIVQAVTDHLKKDPMNSTLLTTLAELYTYDQRYDRALEIYLRLRHKDVYQ
LIHKHNLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKISIDRVVEELRNRPELLHIYLHKL
FKRDHHKGQRYHERQIGLYAEYDRPNLLPFLRDSIHCPLEKVLRHFQNCAQIQFLLKKYI
YFTFI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagtagagaagggaagaaaaccaagtgaagaatccacagatgactctgaggaa
gaggacagcgaggaggagcctaagctgaagtatgagcgactggccaatggggtgactgag
attctccaaaaggatgctgccagctgtatgactgtccatgataagttccttgcactgggc
actcactttgggaaggttttccttctggacatccaaggaaatctgactcagaagtttgaa
attagtccagtgaagatcaaccagatcagtctggatgagagtggagagcatatggggatc
tgctctgaagacggcaaggttcaagtgtttggactctacacaagggagggcttccatgag
aactttgactgccctgtcaaagtggtggcgttacaccctcggttcagcagttcaaactac
aaacaatttgtcaccggaggcaacaagctgctgctgtacgagaagaactggctgaaccgc
tggaagacgtccactctgcacgagggggagggcacaatcactaacgtccaatggagggca
aatctcatcgcctgggccaacaatatgggggtgaagatttatgacatcagcaccaaacag
cgaatcaccaatgtcctgcgggataacgtcagcctgcggcctgatatgtacccctgcagt
ctgtgctggaaagacaactccaccctcatcatcggctggggctcctccattaagatctgt
gttgtgaaggagaggggccacacagagttgagagaccttcctagccgttatgtggaaatt
gtgtctgcgtttgaaacggagttcttcatcagtggcctggcgcctctagcagaccagctg
gtcaccctgtattttgtgaaggagaactctgatcacatggaggaggagttccgagcgcgg
ccttgtctggacatcattcagcctcttccagagggctacgaggaaatctcatcagacgcc
ctgaccgtccgcaacttccaggagaacgagtgtcgagactaccgactggaacattcccag
ggagaatccctctactacatcatcagccctaaagacattgtggtggccaaagagagagac
caagatgaccacattgactggctgctggacaagaagaagtatgaggaagctctgatggct
gccgagatcagcttcaagaacattaaacgccatgaagtccagaaaattgggatggcctac
atcaatcacctggtggagaaaggtgactatgacaccgctgccaggaagtgtcagaaggtg
ctgggaaaaaacatggaactctgggagaatgaggtgtacaggtttaaaaccattgggcag
ttgaaggccatcagtcagtacttgcctagaggggacctgcgtctcagacctgccatctat
gagatgatcttacatgagtttctaaagtcagactatgagggctttgccacgttgatccgt
gagtggccaggagagctctacaataacatgaccattgttcaggcagtcaccgaccacctc
aagaaggaccccatgaacagcaccctgctcaccacactggctgaactgtatacatatgac
cagcggtatgaccgagccctggagatctacctgagactgaggcataaagatgtttaccag
ctgatccacaaacacaacctcttctcttccatagaagacaagattgtgctcctcatggac
tttgataaagagaaagctgtcgacatgctcctggataacgaagacaaaatatcgattgac
agagtggtggaggaactcaggaacaggcctgagctgctacacatttatctccacaaacta
ttcaagagggaccaccacaagggtcagcggtaccatgagagacaaattggcctgtatgct
gaatacgatcggcccaacctactgccatttctgagagacagcatccactgcccactagaa
aaggttctgagacactttcaaaactgtgctcaaatacaatttttgttaaaaaaatatata
tatttcacctttatttaa
DBGET
integrated database retrieval system
