Salmo salar (Atlantic salmon): 100195694
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Entry
100195694 CDS
T04363
Symbol
lsm7
Name
(RefSeq) LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100195694 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
100195694 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100195694 (lsm7)
03041 Spliceosome [BR:
sasa03041
]
100195694 (lsm7)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100195694 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
100195694 (lsm7)
Spliceosome [BR:
sasa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100195694 (lsm7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
GPAT_C
Motif
Other DBs
NCBI-GeneID:
100195694
NCBI-ProteinID:
NP_001134195
UniProt:
B5X6U1
A0A1S2X1E7
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All DBs
Position
ssa03:complement(40927403..40932978)
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AA seq
111 aa
AA seq
DB search
MADRNQDRNKEGEKKKKESIFDLSKYIDKQIRVKFQGGREASGVLKGFDPLLNLVLDSTI
EYLRDPDDQFKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
336 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaaaccaggacagaaacaaggaaggggagaagaagaagaaagagagtatc
tttgacctgtcaaagtacattgataaacaaatccgtgtgaagtttcagggaggacgagag
gccagtggagtcttgaaggggtttgaccccctgttgaacctggtattggacagcaccatc
gagtacttgcgggatcctgacgaccagttcaagttgaccgaggacacgcggcagctgggc
ctggtggtttgtagagggacgtccgtggtgctcatctgtcctcaggatggcatggaagcc
atccccaatcccttcatccagcagcaggacggatag
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