Salmo salar (Atlantic salmon): 100195734
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Entry
100195734 CDS
T04363
Symbol
roa1
Name
(RefSeq) Heterogeneous nuclear ribonucleoprotein A1
KO
K12741
heterogeneous nuclear ribonucleoprotein A1/A3
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100195734 (roa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100195734 (roa1)
03041 Spliceosome [BR:
sasa03041
]
100195734 (roa1)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100195734 (roa1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100195734 (roa1)
Spliceosome [BR:
sasa03041
]
Common components
Common spliceosomal components
hnRNP proteins
100195734 (roa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
RRM_3
OB_RNB
Motif
Other DBs
NCBI-GeneID:
100195734
NCBI-ProteinID:
NP_001134235
UniProt:
B5X7A3
LinkDB
All DBs
Position
ssa13:35788290..35793198
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AA seq
228 aa
AA seq
DB search
MSKEAPREPEQLRKLFIGGLSFETTDESLREHFEQWGSLTDCVVMRDPANKRSRGFGFAT
YSGVNEVDAAMEARPHKVDGRLVEPKRAVSREDSSRPGAHVTVKKIFVGGIKEDTEDSHL
RDYFEQFGKIEVIDIMTDRTSGKKRGFAFVTFDDHDAVDRIVIQKYHTLNGHNCEVRKAL
SRQEMQTTGVGMRGGRGGGGNYGRGGGYGGNSGGGGGGYGGGSGGRRF
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggaggccccacgtgaacccgagcagctccgcaaactgttcatcggaggtctg
agcttcgaaaccacggatgagagtttgcgagaacacttcgaacaatgggggtctcttaca
gattgtgtggtcatgcgagatccagccaacaaacgctctagaggttttgggtttgccacc
tactctggtgtgaacgaggtcgatgctgccatggaagcacgcccccataaggttgatggt
aggttggtagagcccaagagggctgtttccagagaggactctagccgtccaggcgctcat
gtcacagtgaaaaaaatatttgttggcggtatcaaggaagacactgaagactcccaccta
cgagactactttgagcaatttggcaagattgaagtaatagacattatgaccgaccgcacc
agtggcaagaagaggggctttgcctttgtcacgtttgatgaccatgatgcagtggacagg
attgtcatccagaaataccacacgttgaacggtcacaactgtgaagtgaggaaagcattg
tccagacaggagatgcagacaacaggagtgggtatgaggggtggccgcggaggtggcggc
aactatggcagaggtggaggatatggaggtaactcaggaggtggcggcggtggatatggc
gggggctctggtggacgccgattctaa
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