Salmo salar (Atlantic salmon): 100196350
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Entry
100196350 CDS
T04363
Symbol
ddx39
Name
(RefSeq) ATP-dependent RNA helicase DDX39
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
100196350 (ddx39)
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100196350 (ddx39)
Spliceosome [BR:
sasa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100196350 (ddx39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100196350
NCBI-ProteinID:
NP_001134851
UniProt:
B5XE76
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All DBs
Position
ssa06:complement(30181774..30188981)
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AA seq
427 aa
AA seq
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MAENDADNELLDYEEDEEPQGAPETAAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIVVGTPGRILALIR
NKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatgacgctgacaatgagttgctggactatgaagaggacgaggagcctcag
ggagccccagagaccgctgccccagcaggcaagaaggaggtgaagggctcctatgtctcc
atccacagctctggcttcagagacttcctgctcaaaccagagctgctccgcgcgattgtc
gactgtggctttgagcatccgtctgaagttcaacatgagtgcatccctcaggccatcctg
ggcatggacatcctgtgccaggctaagtctggtatgggcaagacggcagtgtttgttctt
gccacactacagcagatcgagcctgtggatggacaggtgtcagttctagtaatgtgccac
acacgagagctggccttccagatcagcaaagagtacgagcgcttctccaagtacatgccc
acagtcaaggcagccgtgttctttgggggcctgtctatcaagaaggacgaagatgtgctg
aagaagaactgccctcacattgtggtgggaacccctggccgaatcctggccctcatccgc
aacaagaccctcaacctaaagaacgtcaagcactttgtcctggatgagtgtgacaagatg
ctggagcagttggacatgaggcgtgacgtacaggacatcttcaggctaacaccacatgag
aagcagtgcatgatgttcagcgccaccctcagcaaggagattcgaccggtctgccgcaag
ttcatgcaggatcccatggaggtgtttgtagatgatgagaccaagctgacgctgcacggt
ctgcagcagtactactgcaagctgaaggacagcgagaagaaccgcaagctctttgacctg
cttgatgtgctggagttcaaccaggtggtgatctttgtcaagtcagtgcagcgctgtgtg
gcgctttctcagctactggtggaacagaacttccctgccattgccatccacaggggcatg
gctcaggaggagaggctgtcccggtaccagcagttcaaggacttccaaaggcggatcttg
gtggccactaacctgtttggccgagggatggatatcgagcgggtcaatattgtcttcaat
tacgacatgcctgaggactcagacacatacttacacagggtggcccgtgctggtcggttt
ggaaccaagggtctggctgtgacctttgtgtcagacgagacagatgccaagactttgaat
gacgtgcaggaccgctttgaggtcaatgtggccgagctgccagaagagatcgacatttcc
acttacattgagcagtccagatga
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