Salmo salar (Atlantic salmon): 100196391
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Entry
100196391 CDS
T04363
Symbol
exosc7, exos7
Name
(RefSeq) exosome component 7
KO
K12589
exosome complex component RRP42
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100196391 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100196391 (exosc7)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100196391 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
100196391 (exosc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
100196391
NCBI-ProteinID:
NP_001134892
UniProt:
B5XER9
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Position
ssa27:3185623..3195381
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AA seq
291 aa
AA seq
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MATVQVSEAEKVYILHGVRDDLRVDGRGCEDYRHMEIETEMVSNTDGSAKVTLGHTDVLV
GVKAEMGKPRPMVPGEGYLEFFVDCSANATPEFEGRGGDELGMELSNTLYKVFNNRYSVD
LKSLCISPGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHISEDEEGGKEI
ELSDDPYDCMRLNVENVPCIVTLCKVGHRHVVDATLQEKACSVASLIISVTRKGTVTCVR
KVGGGSLDPESIFEMTETGKRVGKALHAPLMQLLQEEESLGKKRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggctactgtacaagtcagtgaggctgaaaaggtgtatattttgcatggtgtacgggat
gacttacgggttgatggacgaggatgcgaggactacagacacatggagattgagacagaa
atggtgtcaaatacagatggctcagccaaagtgacactggggcatacagacgtgctagtg
ggagtcaaagctgaaatgggaaagccaaggcccatggtcccaggtgaaggctacctggag
ttttttgttgattgctctgccaatgccacaccagaatttgaaggtcggggtggtgatgag
ctgggcatggagttgagcaacaccctctacaaagtgttcaacaacagatacagtgtggac
ctgaaaagcctctgcatcagcccaggggaacactgttgggtgctctatgtggacgtgctg
ctcctgcagtgtgatggaaatctttttgatgccatctctgttgccattaaagcagctctc
ttcaatacaaaaattcccaaagtgcacatctctgaggatgaggaaggagggaaggaaatc
gagctgtcagacgacccctatgactgcatgcgactcaatgtggagaacgttccctgcatc
gtgaccttgtgcaaggtgggccataggcacgtggtggatgccacgctgcaggagaaggcg
tgttcagtggccagcctaatcatctctgtcacacgcaaggggacggtcacctgtgtcagg
aaggtggggggaggcagcctggacccagagagcatctttgagatgacagagacagggaaa
cgagtagggaaagccctccacgcccccctcatgcagcttctgcaggaggaggagagtctg
ggaaagaagagacagaaagtgggctttcttggttag
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