KEGG   Salmo salar (Atlantic salmon): 100196413
Entry
100196413         CDS       T04363                                 
Symbol
thoc6
Name
(RefSeq) THO complex 6 homolog (Drosophila)
  KO
K13175  THO complex subunit 6
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03013  Nucleocytoplasmic transport
sasa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100196413 (thoc6)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100196413 (thoc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sasa03019]
    100196413 (thoc6)
   03041 Spliceosome [BR:sasa03041]
    100196413 (thoc6)
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     100196413 (thoc6)
Spliceosome [BR:sasa03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100196413 (thoc6)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40 Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd NBCH_WD40 EIF3I WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_SCAP Beta-prop_IP5PC_F Beta-prop_RIG_2nd Beta-prop_ACSF4 Beta-prop_WDR90_POC16_2nd WDR54 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_NOL10_N WD40_like Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_WDR41 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 100196413
NCBI-ProteinID: NP_001134914
UniProt: B5XF26
LinkDB
Position
ssa23:complement(2174953..2196691)
AA seq 323 aa
MGPVEHLHMSVFSQSFSPCGRFLAAGNNYGEIVVFSLSSALSPDATDLSQKPILTFTAHE
GPVFSLLSTDSHLLSAGNGEISAWSWAELIKRNTKAAWTKRPNYKSSLEIPEINAMTINP
TENSLVIGGGDNNIHIMDLESGVFKSVLQGHTDYIHCLSVREREGEILSGSEDGAVRIWD
YRTGQSVHCIEVYKYEECARPQYGKWISCLTTDSDWMLCGGGPSLSLWHLRSMSPTSIFP
LSGCQRQANFYQDMILSVGEGQCVSHCLLGGEVKAQIPCTPHSLNTLALNLNSTEHRVLT
VGGSSHQMDVFTNLSYRTFSLSF
NT seq 972 nt   +upstreamnt  +downstreamnt
atgggtcctgtcgagcacctccacatgtccgtgttctcccagagtttctctccctgtggt
cgtttcctagccgccggcaacaactacggcgagatagtggtgttcagtctctcctcagcg
cttagcccagatgctacagatctgagccagaaacccatcctcacatttactgctcacgag
gggcccgtcttctctctcctctccacggactctcacctcctgagtgccggcaatggcgag
atcagcgcctggagctgggcggagcttatcaagcggaataccaaggctgcttggacaaag
aggccgaattacaaatccagcctggagatcccagagatcaatgccatgactatcaatccc
actgagaacagtctagtgattggtggaggggacaataacatccacataatggatctggaa
agtggcgtctttaagtcagttctgcagggtcatacagactacatccactgtctgagtgtg
agagagagggagggggagatcctctctgggagtgaggacggcgctgtcaggatatgggac
tacaggactggccaatccgtacactgcattgaggtctacaaatatgaggaatgcgcccgc
ccccaatatggcaagtggatcagctgcctgacgaccgactctgattggatgctctgtgga
ggaggcccatccctttccctatggcacctccgctccatgtcacccacctccatcttccct
ctctccggatgccagcgacaagccaacttttaccaggacatgatcttgtcggtgggtgag
ggccagtgtgtgtcccactgtctcctcgggggagaggtaaaggctcagatcccctgcacc
ccccactccctcaacacgctggcactgaacctcaacagcactgaacacagggtgctgaca
gtaggtggaagcagtcaccagatggacgtattcaccaacctgtcctacagaaccttctcg
ctgtctttctga

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