Salmo salar (Atlantic salmon): 100196763
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Entry
100196763 CDS
T04363
Symbol
rfa1
Name
(RefSeq) Replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03030
DNA replication
sasa03420
Nucleotide excision repair
sasa03430
Mismatch repair
sasa03440
Homologous recombination
sasa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100196763 (rfa1)
03420 Nucleotide excision repair
100196763 (rfa1)
03430 Mismatch repair
100196763 (rfa1)
03440 Homologous recombination
100196763 (rfa1)
03460 Fanconi anemia pathway
100196763 (rfa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
100196763 (rfa1)
03032 DNA replication proteins [BR:
sasa03032
]
100196763 (rfa1)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
100196763 (rfa1)
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100196763 (rfa1)
DNA replication proteins [BR:
sasa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100196763 (rfa1)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100196763 (rfa1)
MMR (mismatch excision repair)
100196763 (rfa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
100196763 (rfa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
100196763
NCBI-ProteinID:
NP_001135257
UniProt:
B5X3S9
LinkDB
All DBs
Position
ssa20:58821400..58865005
Genome browser
AA seq
607 aa
AA seq
DB search
MANMLTKGAIEALTKGSNDVQNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLST
QLNPMAEDNRLAPNCICQLKRNVTNVLKDGRRVVVILDMEVVKSADEVAGKIGEPQPYVE
GQSKAPQSAPNPSVHPLPPQNGIDGSMNKGPSREFGGKKGMPPSAMPSTPGGSAKVVPIA
SLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSI
IETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADL
QAREKDTILDVIGVCKSVSDVTRLNTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAENFD
GSGQPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTE
ARTGGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKKV
VDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQL
KDSNEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMNI
RKMASAQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggctaacatgctgacaaaaggagcgatagaggccctaaccaaaggctcgaatgatgta
caaaaccccatacttcaattagtgaacatccggaaaattgatggaggcagtggaccagcc
cgctttcgtctgatgatgagtgatggacagcactcaatgtcctcgttcatgctctccacc
cagctcaacccaatggctgaggacaaccgactagccccaaactgtatctgtcagctgaag
aggaacgtgactaatgtcttaaaggatggacggcgtgtggtggtcatattggacatggag
gtggtgaagtctgctgatgaggtagctggaaagatcggagagccccagccttacgtggaa
ggtcagagtaaagccccacagtcagcccctaatccctcagtccaccccctgccgccccag
aatggaattgatggctccatgaacaaaggtcccagcagagagtttggggggaagaagggc
atgcctccgtctgccatgcccagcactcctgggggatccgccaaagtcgtgcccatcgcc
agcctcaacccctaccagtcaaagtggaccatccgagcccgtgtcaccaacaagagcggc
atccgcacatggagcaactctcgtggggacggcaagctgttctctatggagattgtggat
gagagtggagagatcagagtgactgcctttacccaggaggtggacaaattctacagcatc
atcgagactggcaaggtgttctacatctccaagggatccttgaagatcgccaacaagcag
tactcatccctgaagaatgactatgagatgaccctgaatggagagtccaccatcatcccc
tgtgaagacacccaggacgtacccatggtgcagtgcaactttgtctccatcgccgacctg
caggcccgagaaaaggacaccattttggatgtgattggagtgtgcaagagcgtgtccgac
gtgacccgcctcaacaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatg
gaccagtctggtaaactggtggaggtcaccctgtggggagaggaggcagagaactttgat
ggctctgggcagcccatcctggccatcaaaggggccaagctgtcggactatgggggcaga
tctctatctgcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatac
aagctgcggggctggtatgacaaggagggccattctatggatggccagtctctgacggag
gcgaggacaggtggaggaggagggaacaccaactggaagaccctggctgacatcaagaca
gagcaccttggacacggagacaaggcagactacttcagctgcatcgccaccatagtgtac
atccgtaaggagaactgtctgtaccaggcgtgccctagtcaggactgcaataagaaggtg
gtggaccagcagaacggcatgttccgctgtgagaagtgtgacaaagagttccccaacttc
aagtaccgactcatcctctctgccaacatagcagactacggggacaaccagtgggtgacc
tgcttccaggagagtgctgaagccatcttgggacagaacgctgcttacctagggcagctc
aaggactcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacgttc
gttttccgtaacagagtgaagctggagacctacaatgacgagtcccggatcaaggccacg
gtgatggaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaacatc
aggaagatggcttccgcccaataa
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