Salmo salar (Atlantic salmon): 100196887
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Entry
100196887 CDS
T04363
Symbol
ef1a, EF1A3
Name
(RefSeq) elongation factor 1-alpha
KO
K03231
elongation factor 1-alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100196887 (ef1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100196887 (ef1a)
03016 Transfer RNA biogenesis [BR:
sasa03016
]
100196887 (ef1a)
03012 Translation factors [BR:
sasa03012
]
100196887 (ef1a)
04131 Membrane trafficking [BR:
sasa04131
]
100196887 (ef1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
100196887 (ef1a)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
100196887 (ef1a)
Transfer RNA biogenesis [BR:
sasa03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
100196887 (ef1a)
Translation factors [BR:
sasa03012
]
Eukaryotic type
Elongation factors
100196887 (ef1a)
Membrane trafficking [BR:
sasa04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
100196887 (ef1a)
Exosome [BR:
sasa04147
]
Exosomal proteins
Proteins found in most exosomes
100196887 (ef1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Gtr1_RagA
Motif
Other DBs
NCBI-GeneID:
100196887
NCBI-ProteinID:
NP_001135381
UniProt:
B5DG10
LinkDB
All DBs
Position
ssa14:56892340..56896066
Genome browser
AA seq
462 aa
AA seq
DB search
MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
DKLKAERERGITIDISLWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAGGV
GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRFEEIQKEVSTYIKK
IGYNPATVAFVPISGWHGDNMLEASPNMGWFKGWKVERKEGGASGVTLLEALDSILAPSR
PTDKPLRLPLQDVYKIGGIGTVPVGRVETGTLKAGMIVTFAPANVTTEVKSVEMHHETLE
AALPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAGNFTAQVIILNHPGQISQGYAPV
LDCHTAHIACKFSELKEKIDRRSGKKLEDNPKALKSGDAAIIVMVPGKPMCVESFAAYPP
LGRFAVRDMRQTVAVGVIKAVDKKAASTGKVTKSAIKATKAK
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaggaaaagatccacattaacatcgtggtcattggccatgtcgactccggaaag
tcaaccaccacaggtcatctgatctacaaatgcggaggcattgacaagagaaccattgag
aagttcgagaaggaggctgctgagatgggcaagggctctttcaagtatgcctgggtgctg
gacaagctgaaggctgagagggagcgtggtatcaccattgacatttccctgtggaagttc
gagaccgccaagtactacgtcaccatcattgatgcccctggacacagagactttatcaag
aacatgatcactggtacctctcaggctgattgcgctgtgctgattgttgctggtggtgtg
ggtgagtttgaggctggtatctctaagaacggccagacccgtgagcacgctctcctcgcc
tacactctgggagtgaagcagctcattgttggagtcaacaagatggactctactgagccc
ccctacagccagaagcggtttgaggagatccagaaggaggtcagcacctacatcaagaag
attggctacaaccctgccaccgtcgcctttgtgcccatctctggatggcatggggacaac
atgctggaggctagccccaatatgggctggttcaagggatggaaagtcgagcgtaaggag
ggtggggctagcggtgtgacccttctggaggctctggactctatcctggccccctcccgc
cccactgacaagcccctccgtctgcccctgcaggacgtctacaaaatcggcggtattgga
acagtacccgtgggccgtgtggagactggtaccctgaaggccggtatgatcgtcaccttc
gcccccgctaatgttaccactgaggtgaagtctgtggagatgcaccacgagaccctggaa
gcagctctccccggtgacaatgtcggctttaatgtcaagaacgtatctgtcaaggatatc
cgtcgtggcaacgtggctggagacagcaagaatgaccccccaatggaggccggcaacttc
acagctcaggtcatcatcctgaaccaccctggccagatctcccagggctatgcccccgtg
ctggattgccacaccgctcacatcgcctgcaagttcagcgagctcaaggagaagatcgac
cgtcgttccgggaagaagcttgaggacaaccccaaagccctgaagtctggagacgccgcc
atcattgtcatggtgccaggaaagcccatgtgtgtggagagcttcgccgcctaccctccc
cttggccgttttgccgtgcgtgacatgagacagaccgttgccgttggtgtcatcaaggcc
gtcgacaagaaggctgccagcactggcaaggtgaccaagtctgccattaaggccacaaaa
gccaaatga
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