Salmo salar (Atlantic salmon): 100286410 Help Entry 100286410         CDS       T04363                                  Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa04510   Focal adhesion sasa04512   ECM-receptor interaction sasa04518   Integrin signaling Brite KEGG Orthology (KO) [BR:sasa00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100286410    04518 Integrin signaling     100286410  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     100286410  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sasa00536]     100286410 Glycosaminoglycan binding proteins [BR:sasa00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100286410 SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  100286410 NCBI-ProteinID:  XP_014001028 UniProt:  A0A1S3MCU3 LinkDB All DBs Position ssa15:62188998..62218204 Genome browser AA seq 1489 aa AA seqDB search MFSFVDSRTVLLLVASQVVLISIARCQEEDDQEAGSCIQDAHRYNDKDVWKPEPCRICVC DSGSVLCDEIICEEIRECANPIIQPRECCPICPADASAPTEAVIGAKGQKGEPGEIADVV GPNGPAGPMGPSGEQGPRGEAGAKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA GALGPQGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLD GAKGEGGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGASGSAGARGNDGLPGPAGPP GPVGPAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPV GPQGGPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP GVGGPKGGTGDPGRAGEPGLPGARGLTGRPGDAGPQGKVGPGGSAGEDGRPGPPGPQGAR GQPGVMGFPGPKGANGEPGKAGEKGLVGRQGLIGLSGKDGETGAAGPNGPAGPAGERGEQ GAAGPSGFQGLPGPAGPPGEGGKPGDAGVPGEAGAAGVTGPRGERGFPGERGGAGTQGLQ GPRGLPGTPGTDGPKGAIGPTGGAGSQGPPGLQGMPGERGAGGILGAKGDRGDNGEKGPE GAPGKDGSRGLSGPIGPPGPAGPNGVKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFA GPPGADGQPGAKGEFGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGSKGTRGAQGGAGAT GFPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEK GDAGEDGPPGPDGPSGPHGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGAGGDR GPPGPVGPPGLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAP GPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFT GLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGTPGPLGPSGPRGRSGET GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVD STLKSLNYQIENLRSPDGSQKNPARTCRDIKLSHPEWKSGDYWVDPNIGSTADAIKVFCN METGETCVYPSIANVPHKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFL RLLSTEASQNLTYHCKDSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVVEDGC KKHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4470 nt NT seq  +upstreamnt  +downstreamnt atgtttagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta atatccattgccagatgccaggaagaggatgaccaggaggcaggcagctgcatccaggat gcccatcgctataacgataaggatgtgtggaagccggagccatgtcgtatctgtgtgtgt gacagcgggtcagtgctgtgtgatgagatcatctgcgaggagatcagagagtgtgccaac cccatcatccaacctagagagtgctgccccatctgccctgcggacgccagcgcccccact gaggcggtgattggtgctaagggccagaaaggggaaccaggcgagattgcagatgttgta ggaccgaatggaccagcaggccctatgggcccctcgggcgagcagggaccacgtggagaa gctggagctaagggtgataagggaaatgttggccccagaggcagagatggcgagcctgga acccccgggaaccccggaccccctggccctccaggacccaacggacccccaggtcttggc gggaacttcgctgctcagatggccggtggattcgatgagaaagctggaggcgcacagatg ggagtgatgcaaggacctatgggccctatgggtccccgtggtccacctggcccttctgga gcccctggcccacaaggtttccaaggtaaccccggagagactggagagccaggccctgct ggtgcactgggaccccaaggaccccctggaccttctggcaaaccaggaagtgatggtgag gctggcaaacctggaaaggctggtgaacgtggacctgcaggacctcagggagctcgtgga ttccccggaactcctggtcttcccggaatcaaaggacacagaggtcatcctggtcttgat ggagctaagggagagggtggtgctgccggagccaagggtgagggtggcgctcccggagag aatggcgcccctggaccaatgggaccacgtggtctgcccggagagagaggccgtcccgga gcttctggctctgctggtgcccgtggtaatgatggcttgcctggccctgctggtcctcct gggcctgttggacctgctggagcacctggtttccctggatcccctggttccaagggagaa gctggccccactggtgcccgtggagctgaaggcgcacagggaccccgcggagaggctggc acacccggatctcccggtcccgctggcgcctctggcaaccctggtactgatggtatcccc ggagctaaaggatctgctggcgcttctggtattgctggtgcacctggtttcccaggaccc cgtggcccccccggacctcagggagcaacaggacctcttgggcccaagggccagtcggga gaccccggtattcctggtttcaaaggagaggctggacccaagggagagcttggccctgtt ggtccccaaggcggccctggccccgctggcgaggagggcaaaagaggagcaagaggagag ccgggtgctgctggaccacttggacctcctggcgagagaggagctcccggtaaccgtggt ttcccgggtcaggatggtcttgctggtgctaagggagcccctggtgaccgtggtgttccc ggcgtgggtgggcctaagggaggcactggtgaccccggccgcgcaggagagcctggtctt cccggagccagaggtctcactggtcgccctggagatgctggtcctcaaggcaaagttggt cctggtggttctgctggtgaggacggtcgccccggcccacctggtcctcagggagcacgt ggccagcctggtgtgatgggattccccggaccaaagggagccaatggtgagcctggcaag gcaggagagaagggtcttgtgggtcgtcaaggtctgataggtctgtctggtaaagatggt gagactggcgctgctggacctaacggccctgctggacctgctggagagagaggagagcag ggagctgctgggccatctggcttccagggtctgcctggacctgctggccccccgggagag ggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgctggcgttacggga cccagaggcgagcgtggtttccctggtgagaggggcggtgcaggaactcagggtctgcag ggacctcgtggacttcctggaactcccggaaccgatggacccaagggagccattgggcca actggtggtgctggatctcagggaccccccggcctgcagggtatgccaggagagagagga gctggtggtatcctcggagccaaaggtgacagaggtgacaacggcgagaaaggacctgag ggcgctcctggaaaggacggttctagaggtttgtctggtcccattggtcctcctggccca gctggtcccaacggcgtgaagggtgagggtggaccttctggcccaactggtgctgctggt gcccgtggtgctcctggtgaccgtggtgagggtggtcctcctgggcctgctggcttcgct gggcctcctggtgcagatggtcagcctggagccaagggagagtttggcgaggctggacag aagggagatggtggtgcccctggacctcagggaccctctggggcccctggacctgtgggt cccactggtgtttctggatctaaaggaacccgtggtgcccagggtggcgctggtgctact ggtttccctggtgctgctggaagagttggatctcccggtcccaacggtaaccctggtgct gctggccccgctggtcctgctggtaaagacggtcctaagggagttcgcggtgacgctggc accccaggaagacagggagacgccgggctgcgtggagttgctggagcccctggcgagaag ggagatgctggagaagatggtccccctggtcctgatggtccttcaggtccccatggtctg gctgggtctcgtggtattgttggtctgcctgggcagcgtggagagaggggcttcccaggc cttcctggaccttctggagagcccggtaagcagggagcttctggtgctggtggtgaccgt ggaccccctggccctgtgggaccccctggactttctggacctgcaggagagcccggaaga gagggcaacgctggatctgatggaccccctggtagagatggatccactggagtcaagggt gagcgtggtaacactggccctgctggtgctcctggtgccccaggcgctcccggtgccccc ggccctgtcggccccctgggcaagcagggagacagaggagagggaggtgctcaaggacct gccggacccgctggaccagctggcgctagaggaatggctggaccccaaggaccccgtgga gacaagggagaggctggcgagacaggagagaggggacagaagggacaccgtggcttcact ggtctgcagggtcttcccggaccacccggctccgctggagaccagggagctgctggacct gccggacctagtggtgctaaaggaccccctggcccagtcggtcccgctggtaaggatgga tctaacggtacccctggacccctcggaccctctgggcctcgtggtcgttctggagagact ggtcctgctggtcctcctggtaaccccggaccccctggtcctcctggtcctcccggccct ggcatcgacatgtctgccttcgctggcctgtctcagcctgagaagtctccggatcccttg aggtacatgagggctgatgaggcatccagctccctgaggcagcatgacgtggaggtggac tccacactcaagtccctcaactaccagatcgagaacctgcgcagccccgacggtagccag aagaaccccgcccgcacctgcagagacatcaaactgtcccaccccgagtggaagagtggt gactactgggtggatcctaacattggcagcacagctgacgccatcaaggtcttctgcaac atggagactggcgagacctgtgtgtaccccagcatagccaatgtaccgcacaagaactgg tggacaagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaacggagga ttccacttcagctacgctgaggacggtaccaacgccgccagtatccagctgaccttcttg aggctgctgtccacggaagcatctcagaacctcacctaccactgcaaggacagcgtggct tacatggacgcgtccactggcaacctgaagaaggctctgctgctccagggctccaacgac gtggagatcagagctgagggcaacagccgcttcacttacagcgtggtggaggacggctgc aagaaacacacaggccagtggggcaagactgtcttcgagtacaaaacacagaagacctcc cgtctgcccatcgtggacattgctcccatggacatcggaggagcggaccaggagttcggt gtggacgtgggcgcagtctgcttcttgtaa

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