Salmo salar (Atlantic salmon): 100286669
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Entry
100286669 CDS
T04363
Symbol
hmgb1, HMG-1, hmgt
Name
(RefSeq) high mobility group box 1
KO
K10802
high mobility group protein B1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03410
Base excision repair
sasa04140
Autophagy - animal
sasa04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100286669 (hmgb1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100286669 (hmgb1)
09143 Cell growth and death
04217 Necroptosis
100286669 (hmgb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sasa03036
]
100286669 (hmgb1)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
100286669 (hmgb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
100286669 (hmgb1)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
100286669 (hmgb1)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
100286669 (hmgb1)
MMR (mismatch excision repair)
Other MMR factors
100286669 (hmgb1)
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
100286669 (hmgb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HTH_Tnp_Tc3_2
HTH_32
HMG_box_5
NOA36
Sigma70_r4
HTH_28
HTH_23
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
100286669
NCBI-ProteinID:
NP_001140081
UniProt:
C0HBP8
LinkDB
All DBs
Position
ssa11:86139318..86145441
Genome browser
AA seq
345 aa
AA seq
DB search
MRRKELSEEFRDKVVDRHRLGEGYKKISHTLSIPLGTVRSIIKKWKVYGTTETLPRSGRP
SKISSWAKRILALELTMRPTASLKELQSSMAEMGENVHESTIARSFANCSRYGRSERRRT
LQKTNSDLQSRAEFAEKHLDIEMGKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFS
EFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPS
SAFFIFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDI
TAYRNKGKVPVSMPAKAAAPAKDDDDDDDDDEDEDDDDDDDEDDE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcaaagagctttcagaagagttcagggataaagttgtagatcggcacagatta
ggggaaggttataagaaaatttcccatacattgagtatcccattgggtacagtcaggtca
atcattaagaagtggaaggtgtatggaaccaccgagactctgcccagatcaggacgacct
tccaaaataagcagctgggcgaaaaggattctagctctagaactcaccatgaggccaact
gcctctttgaaagagctgcagagttccatggctgagatgggagaaaatgtccatgaatca
actatagctcgatcattcgccaactgtagccgctatggccgatcggaaagaaggagaaca
ttacagaaaacaaacagcgatctccaatcacgtgcagagtttgcagaaaagcatttagat
attgagatggggaaagatccaaggaagccgaggggcaagatgtcctcctatgcctacttt
gtccagacctgtcgggaggagcacaagaagaaacacccggaagcttctgtcaacttctca
gagttctccaagaagtgctctgagagatggaagaccatgtccgccaaggagaaggggaag
tttgaggatctggccaaactggacaaggtgcgatatgagagggagatgaggagctacatt
cctcccaagggagagaagaagaagaggttcaaggaccccaacgcccccaagagaccatcg
tctgcgttcttcatcttctgcgctgacttcagaccccaggtgaagggggagaccccaggc
ctgtctattggtgatgtggccaagaagctgggagagaagtggaacaacctaacagcggag
gacaaggtgccctatgagaagaaggctgccaagctgaaggagaagtacgagaaggacatc
actgcgtaccgcaacaagggtaaggtgccggtcagcatgccagcgaaggccgccgcaccc
gccaaggacgacgacgatgacgacgacgatgatgaggatgaggatgatgacgatgacgat
gatgaggatgacgagtag
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integrated database retrieval system