Salmo salar (Atlantic salmon): 100380336
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Entry
100380336 CDS
T04363
Symbol
coda1
Name
(RefSeq) Collagen alpha-1XIII chain
KO
K16617
collagen type XIII alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
100380336 (coda1)
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100380336 (coda1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2637
Motif
Other DBs
NCBI-GeneID:
100380336
NCBI-ProteinID:
NP_001167092
UniProt:
C0H9S7
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All DBs
Position
ssa18:complement(13278151..13391149)
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AA seq
639 aa
AA seq
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MEEDQKWGVAGRSVGRTCSEHPCKKRFWRNWKDLSGITVGIVFSVLSLGFCVLVYLRTSE
LQSRILNLEQQRDTQLSAWISLEQVEPVIFSRIDQILEEKLAARLPKTREAREAPHSCVC
PPGPPGPPGRSGFPGDKGTMGIPGRLGLKGYAGEKGAPGEPGLSIIGPRGPPGQPGTRGF
PGFPGPIGLDGKPGQNGLKGDLGQRGSKGVPGESGQKGEKGVCGDYSHRKRRIVQPCVGG
LATQGEPGAQGPPGPPGPPGTSGTPGLNGASGPPGKPGEPGKPGKDPRLLPAMKGEPGMP
GIKGDVGPAGPEGPKGLKGDLGLKGDKGDPSAAGTGIKGEPGTPGLPGLSGFKGDKGDQG
LKGEEGSDGPAGPRGPPGAAGEPGKSEIINNENDIRNVPLMGPPGLPGPQGVPGTPGTKG
EVGLPGPSGLDGEKGPRGKPGEAGPVGPAGPEGPKGEGGLMGFSGTKGDKGDMGPSGSPG
QKGESGDKGGMSDMVYGPPGPPGPQGPVGPAGPEGLGGPKGEPGIGIRGEKGASGWKGDK
GDRGHLGLPGLIGPVGVAGPAGLKGDRGYKGDSGVPGPIGPQGIPGLVGPQGFKGNRGER
GKKGNRGTKGDKGDQGAPGLDAPCPLGDDGLPVSGCWNK
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagatcaaaagtggggagttgctggtagaagtgtaggcaggacttgcagtgag
cacccttgcaaaaaacgcttttggaggaattggaaagatttgtctggtataactgtcggc
atcgtattctctgtattgtctcttggattttgcgttctcgtttacctgagaacctcggag
cttcagtccaggatcctaaacttggaacaacagagagatacgcagctctccgcgtggatc
tcactcgagcaggtggaaccagttatctttagccgaatagatcagattctggaagagaaa
ttggcggctcgacttcccaaaacacgagaggccagagaagcaccccatagctgcgtttgt
ccaccaggacctcctggtccacccggacgatcaggctttccgggtgacaaaggaacaatg
ggaattcctggaagattggggttaaaaggatacgcaggggagaagggagcgccaggggag
ccaggcctgtccatcattgggccacgaggacctcctggacagccaggaacaagaggcttc
ccaggcttcccgggtccgattgggttggacggcaagcccgggcagaacggcttgaaagga
gacttgggtcaacgtggttccaaaggagttccaggtgaatctggtcagaaaggggaaaag
ggcgtatgcggagactacagtcacaggaagcggcgtattgtacagccctgtgttggagga
ttggccacacagggtgagcctggagctcagggcccaccaggacctcccggccccccaggg
acctcagggacccccggactgaacggtgcaagtggaccaccgggtaaacccggtgaacca
ggaaaacctggaaaagatccaaggctcctaccagcgatgaagggtgagccaggcatgcca
ggaataaagggtgatgttggccctgctggtcccgaaggccccaagggactgaagggagac
ctagggctgaagggtgacaagggtgaccccagcgcagcagggactggcatcaaaggagaa
ccagggacaccaggacttccaggcctatcaggattcaagggtgacaaaggcgaccaaggt
ctcaagggggaagaaggatctgatggcccagctggaccaagaggtcctccaggtgcagca
ggggagccaggaaaatcagaaatcatcaacaatgaaaatgatattcggaatgtacctttg
atgggcccacctggactacctggccctcaaggggtccccggaacaccaggaacaaagggt
gaagttggccttccaggcccttcaggtcttgacggagagaagggtcctcgggggaagcct
ggagaggcaggtcctgttggcccagccggccctgaaggtcccaaaggggaggggggcctg
atgggtttctccggaaccaaaggagataagggggacatgggcccatctggatcacctggt
cagaagggtgagtccggagataagggaggaatgtcagacatggtatatgggcctccaggt
cctccagggccccaaggaccagttggccctgcgggacctgaaggactgggagggccaaag
ggggagccaggcataggcatacggggagagaagggagcatctggttggaagggcgataaa
ggggacaggggtcatcttgggcttcctggcctgataggaccagttggtgtggcagggcca
gcaggactgaagggagatcgaggttacaagggagattcaggagtcccaggaccaattggg
cctcaaggcatccctggtttagtaggaccacaaggattcaaagggaaccggggagagagg
ggcaagaaaggcaacaggggaactaaaggggataagggggaccaaggagcacctggatta
gatgccccctgtccattgggggatgatggcttaccagtatcagggtgttggaataaataa
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