Salmo salar (Atlantic salmon): 100380348
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Entry
100380348 CDS
T04363
Symbol
ubf1
Name
(RefSeq) Nucleolar transcription factor 1
KO
K09273
upstream-binding transcription factor
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
100380348 (ubf1)
03021 Transcription machinery [BR:
sasa03021
]
100380348 (ubf1)
Transcription factors [BR:
sasa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
100380348 (ubf1)
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
100380348 (ubf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_5
HMG_box
HMG_box_2
DUF4473
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
100380348
NCBI-ProteinID:
NP_001167104
UniProt:
C0H9W0
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All DBs
Position
ssa03:5962756..5983414
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AA seq
665 aa
AA seq
DB search
MNGSSSVSSASQTIQIKTEPVVDTWSKEDCLTLLERIRSLLPDGDAMKYKTTESHFDWEK
VCFGGFTGDMCKQKWAKVSTEVRKFRTMTELIVDAIEFVKNPYKGKKLKTHPDFPKKPLT
PYFRFFMEKRAKYAKIHPEMSNLDLTKILSKKYKELPDKKKQKYITEFQREKESFEKNMA
RFKEDYPELIEERKKSDLPEKPKTPQQLWYNHEKKTYMKLHPDVSQKELKEALRRQWSQL
SDKKRLKWISKALELQKDYAGCMRVYQEAHPDAEEHVKSVLTKAERQLKDKFDGRPTKPP
PNGYSLYCAELMVNMKDVPSTERMVLCSKQWKVMTQKEKDMFQKRCEQKKKQYEIDLQRF
LESLPEEERDRVMTEEKLGGSRLGMGGVGSPHRSKSPSAKVGLTKLQQERCREAEQGHWV
HSGLTAKEKRDGKKRTKLPETPKTAEEMWQQGVVGDYLAKYRSDRKKTQSAMESAWKAME
KKEKIPWIKKAAEDQKRYEVQYRPVRELLEMRTAQAGAGQRKPKFEGEPRKPPVSGYQMF
SQELLTNGELNHFSLKERMVEIGKRWHKLSQSHKDKYKKLVEELQIEYKAELEAWVKSLS
PQERAVYEEFSTTKRRSTTKPRGGTGAKVGVTAVKGKANDDDHDDDQSEGSSSSSSEDSS
DSDTD
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcagcagcagtgtgtcctctgcctcccagaccatccagataaaaacagaacca
gttgtggatacatggagtaaggaggactgcctcactcttttggagagaattcggagcctg
ttgcctgatggtgatgccatgaaatacaagaccaccgagtcccactttgactgggagaag
gtctgcttcggaggcttcaccggcgacatgtgcaaacagaagtgggcgaaggtgtccact
gaggtgcggaagtttaggactatgaccgagctcatagttgatgccattgagtttgtgaag
aacccttacaaagggaagaaattgaagacacacccagacttcccaaagaaaccccttaca
ccgtatttccggttcttcatggagaagcgagccaagtatgccaagatccaccccgagatg
agcaaccttgacctcaccaagattctgtccaagaaatacaaggaactcccagacaagaaa
aagcaaaagtacatcaccgagtttcagcgagagaaggagtcctttgaaaagaatatggcc
cgattcaaagaggactaccccgagttgatagaggagagaaagaagtcggacctccctgag
aagcccaagacgccccagcagctgtggtacaaccatgagaagaagacctacatgaagctc
caccctgatgtgagccagaaggagctgaaggaagctctgaggagacagtggtcccagctg
tcagacaagaagagacttaagtggatcagcaaggccctggagctgcagaaagactatgcg
ggttgtatgagagtctaccaagaggcccatccagacgctgaagagcacgtcaagtccgtc
ctcaccaaagccgagcggcagctcaaggacaagttcgacggcaggccaaccaaacctccg
ccgaatggttactccctatactgtgctgagctgatggtgaacatgaaggatgttcccagt
acggagcgtatggtgctgtgcagtaagcagtggaaggtgatgacgcagaaggagaaggac
atgtttcagaaacgctgcgagcagaaaaagaagcagtatgaaattgacctacaaaggttt
ctcgagagtctcccggaggaggagagggaccgggtgatgacggaggagaagctggggggc
tcgcggctgggcatggggggtgttggtagccctcacagatccaagtccccgtccgccaag
gtgggtctcacaaaactacaacaggagcgctgtcgcgaagctgagcaggggcactgggta
cactccggcctgacggcgaaagagaagcgcgacggcaagaagaggaccaaactccctgag
acacccaagactgccgaggagatgtggcaacagggcgtcgtaggagactacctggccaag
tacaggagtgatcgtaagaagacccagagtgccatggagtcagcctggaaggccatggag
aagaaggagaagatcccttggatcaagaaggcggctgaagaccagaagcgatacgaggtt
cagtaccggcccgtgagggaattgttggagatgagaacagcccaggcaggagcaggccag
aggaaacccaagtttgaaggggagcccaggaagccaccagtgagcggctaccagatgttc
tctcaggagctgttgaccaacggcgagctgaatcacttcagtctgaaggagcgcatggtg
gagatcggcaagcgctggcacaagctcagccagagtcacaaggacaagtacaagaagctg
gtagaggagctgcagattgagtacaaggccgagctggaggcctgggtcaagtctctctct
ccccaggaacgagcggtttatgaagagttctccaccacgaaacggcggagcaccaccaag
ccgcgggggggcacgggggccaaagttggcgtgactgcagtgaaggggaaggcgaatgac
gatgaccatgatgacgaccaatctgagggttccagcagctcttcctcagaggacagcagt
gactcggacacagactag
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