Salmo salar (Atlantic salmon): 100380363
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Entry
100380363 CDS
T04363
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100380363 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100380363 (cstf3)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100380363 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_19
TPR_6
TPR_16
Motif
Other DBs
NCBI-GeneID:
100380363
NCBI-ProteinID:
NP_001167119
UniProt:
C0HA06
LinkDB
All DBs
Position
Unknown
AA seq
716 aa
AA seq
DB search
MSTEATADQAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLFIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NSPQEAVQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDVWYEAAQY
LDQSSKLLAEKGDMNNSKVFSDEAANIYERAIGTLLKKNMLLYFSFADYEESRLKHEKVH
SIYNRLLAIEDIDPTLVYIQYMKFGRRAEGIKSGRIIFKKAREDMRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPEK
SGEIWARFLAFESNIGDLASILKVERRRFTAFKDEYEGKETALLVDRYKFMDLYPCSASE
LKALGYKDVSRAKLAALLQTETVVTPSAPTQKDEADRKPEYPKPDTNQMIPYQPRHQAPP
GLHPVPGGVFPVPPAAVILMKLLPPPTCFVGPFVQVDELMESFRRCTLPETVDAAVELIT
GRQPDASGEGNGSMENHAMTKSLKRPNADSDEEEDKGAVAPPVHDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtccacggaagcaaccgccgaccaggcagctgagtatatcccagagaaggttaagaaa
gcagagaagaagttggaagaaaacccatatgaccttgacgcatggagcattctgattcga
gaagcacagaaccaaccaatagacaaagcaaggaagacgtatgaacgacttgtggcccag
ttcccaagctcgggcagattctggaaactattcattgaagcggagatcaaggcaaaaaac
tatgacaaggtagaaaagttgtttcagagatgtctgatgaaagtgctgcacatcgacctg
tggaaatgctacctttcatacgtccgagagaccaaaggaaagctacccagctacaaagag
aagatggcgcaggcgtatgactttgcgctggataaaatcggcatggagatcatgtcctac
cagatatgggtggactacatcaacttcctcaaaggagttgaggcggttggttcgtacgct
gaaaaccagcgaatcacggcggtgcgcagggtctaccagaggggctgtgtgaaccccatg
atcaacatcgagcagctctggagagactacagcaagtatgaggagggcatcaacgtacat
ctggccaagaagatgattgaggaccgcagcagagactacatgaacgctaggagagtggcg
aaggaatatgagactgtgatgaagggtctggataggaacgccccctcggtgcccccccag
aactccccccaggaggcggtgcaggtggagatgtggaagaagtacatccaatgggagaag
agcaacccgctccgcacagaagaccagacactcatcactaagagagtgatgtttgcctat
gagcagtgtctgttggtgctgggccatcaccctgacgtgtggtatgaggctgcccagtat
ctggaccagtccagtaaactactggcagagaagggggacatgaacaactctaaggtgttc
agtgacgaagcagctaacatctacgagcgcgccatcggtactctactgaagaagaacatg
ctgctgtacttttcattcgctgactacgaggagagtcgattgaagcatgaaaaggtccac
agcatctacaaccgtctgctggccatcgaggacatcgaccccacgctggtctacatccag
tacatgaagtttggccggcgggccgagggcatcaagtcaggccgcatcatctttaagaag
gcccgggaggacatgcgcacgcgtcaccacgtctatgtgactgcagcactgatggagtac
tactgcagtaaggacaaatcagtggcctttaagatatttgaactgggcttgaagaaatat
ggagacattccagagtatatacttgcatacatcgattacctctcacaccttaatgaggac
aacaacaccagagttctgtttgagcgtgttctcacctcgggaagcctgtcgccagagaag
tctggtgagatctgggcacgtttcttggcctttgagagtaacatcggggacctggccagt
atcctgaaggtggagcgcaggcgtttcacggccttcaaggacgagtacgaaggcaaggag
acagccctgctggtggacagatacaagttcatggacctgtacccctgctctgccagcgag
ctcaaagctctcggatacaaggacgtgtcccgtgccaaactggcggcgttgctccagaca
gagacggtggtgactccatcggctcccacgcaaaaggacgaagccgaccgcaaaccagag
taccccaaacctgacactaaccagatgatcccctaccaaccacgacaccaggcccctcca
ggactgcaccctgttccagggggggttttcccggtccccccggccgcagtcatcctgatg
aagctactgccaccacccacctgcttcgtggggccctttgtgcaggtggatgaactgatg
gagagcttcaggagatgtacactaccagagactgtagatgcagcagtagagttgataaca
ggcaggcagcctgatgccagcggagaagggaatggctccatggagaaccatgccatgacc
aagtcactgaagagacccaacgcagactctgatgaagaagaggacaagggcgctgtggcc
ccacccgttcacgacatctaccgcgctcgccagcagaagaggatccggtga
DBGET
integrated database retrieval system
