Salmo salar (Atlantic salmon): 100380454
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Entry
100380454 CDS
T04363
Symbol
nxf1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03008
Ribosome biogenesis in eukaryotes
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
sasa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100380454 (nxf1)
03015 mRNA surveillance pathway
100380454 (nxf1)
03008 Ribosome biogenesis in eukaryotes
100380454 (nxf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100380454 (nxf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100380454 (nxf1)
03009 Ribosome biogenesis [BR:
sasa03009
]
100380454 (nxf1)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100380454 (nxf1)
mRNA cycle factors
Stress granule specific factors
100380454 (nxf1)
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
100380454 (nxf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
LRR_9
LRR_6
Motif
Other DBs
NCBI-GeneID:
100380454
NCBI-ProteinID:
NP_001167209
UniProt:
C0HAN0
LinkDB
All DBs
Position
ssa11:75644047..75673749
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AA seq
632 aa
AA seq
DB search
MSTADDSRYCNDHDDRVGGQKVRNRKGRGPFRAPMYSDQGPVGPRPRHRGSQRGGGGPGP
RARFDDEDGDVAMTDSNSQDGSSQHRFNPYGRPNRRGDDRFDRGRRGGGGGHRGRGNNKG
GDGGGGGRKNWFKMSVPYGKKYDKDWLITALQNICSMPFTPVHYHVEGNRAEFFIEDSTT
ANALFKVSRKITDKEGYKVTVLMNPCPPPSFLQSELKPADLEHLKQCMAKRFDGSQQALD
LNNIRIDPDLVSQNIDVTLNRKNSMRAVIKIIEENIPELVCLNLSNNKLFRLDDLSELVN
KVPNLKTLNLSHNELKTERELDRIKGLKLVELWLERNPLCDYFKDQASYISEVRERFPRL
LKLDGQDLPPPIVFDVEVTPDALPPCKPSYFCSEEIKTPIVGFLQQYYSVYDSGDRQPLL
DAYHDGATFSLSMPFTMQNPSRCSLGDYHKDSRNLKKLKDPTTRFRLLKHTRLNVVAFLS
ELPKTQHDTASLIVDVNTFTNTLLSFTVTGVFKEVEGKSRDSVRAFCRVFVTVPAGGTSL
CIVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLSAFSLKSGMNLEWSQK
CLQDNEWDFNRAAQVFTDLKAHGKIPDVAFIK
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagccgacgattcacgttactgcaacgatcacgatgaccgagttggaggacaa
aaggttcgcaaccgtaaaggcagagggcctttcagggcccctatgtatagtgaccagggg
ccagtaggaccaagaccaagacatcgtggtagccaaagaggcggcggtggcccgggaccc
agagcgagattcgacgatgaggatggagatgtggcaatgacggacagcaactcccaagat
ggatcctcccaacacagatttaacccttatggaaggccaaatcggcgtggtgacgaccgc
tttgaccggggccgcagaggtggtggaggaggtcacaggggtcgtgggaataacaaagga
ggggatggaggtggaggtggccgcaagaactggttcaagatgtctgtcccctatggaaag
aaatacgacaaagactggctgataacagcactgcagaatatctgctccatgcccttcacc
ccagtacattaccacgtggagggaaaccgagcagagttctttattgaggattccacgact
gcgaatgccttgtttaaggtatcacggaagatcacagacaaagagggctacaaggtgact
gtactgatgaatccctgtcctccaccctcctttctccagtctgaactaaagccagctgat
ctggagcacctgaagcaatgcatggctaaacgttttgatggctctcaacaagccctggac
ttaaacaacatccggatagacccagacctggtgtcccagaacattgatgtgactttgaac
agaaagaactccatgcgtgctgttattaagataattgaggagaatattccagagcttgtg
tgtctgaaccttagcaacaacaagctatttaggctggatgacctgtcagagctggtcaat
aaggttcccaacctgaagacactcaacctttctcataacgagttaaagacagagcgcgag
ctggacaggatcaagggtcttaagctggtggagttatggctggagaggaaccccctttgc
gactatttcaaggaccaggcttcatacatcagcgaggtgagagagaggttccccaggctt
ctcaaactggacggtcaggatctccccccgcccatagtttttgatgtggaggtgactcct
gacgcccttccaccttgcaagcccagctacttctgctctgaagagatcaagactcccatc
gttggcttcctacaacaatactacagtgtgtatgactccggagacagacagcctttgtta
gatgcctaccatgatggagcaaccttctccttgagcatgcccttcaccatgcagaacccc
tccaggtgcagtcttggagattaccataaagacagtcgcaacctcaaaaagctcaaggat
cccaccacacgattccgcttactgaagcacactcgtctgaatgtggtggctttcctgagc
gaactgcccaaaacgcagcatgacactgcatctctaattgtggacgtcaacaccttcacc
aacacgttactgtcgttcacggtcactggagtgttcaaagaagttgaaggtaaatcccgc
gactctgtgagagctttctgccgggtgtttgtcacagtgccagctggagggacaagtctt
tgcatagtgaatgacgagctgtttgtgcgcaatgctacgactgaggagatccgccgggcc
tttgtggcacctgcccccaccccatccagcagtcctgtccccaccctctcagccccccag
caagagatgctctctgccttctccctcaagtccggcatgaatcttgaatggtcccagaag
tgcctacaggacaatgagtgggatttcaaccgagcagcgcaggtcttcacagacctcaag
gctcatggaaagatcccagatgttgctttcataaagtga
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