Salmo salar (Atlantic salmon): 100380596
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Entry
100380596 CDS
T04363
Symbol
prp19
Name
(RefSeq) PRP19/PSO4 homolog (S. cerevisiae)
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
sasa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100380596 (prp19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100380596 (prp19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
100380596 (prp19)
04121 Ubiquitin system [BR:
sasa04121
]
100380596 (prp19)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
100380596 (prp19)
Enzymes [BR:
sasa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100380596 (prp19)
Spliceosome [BR:
sasa03041
]
Complex B
Other components
Prp19 complex
100380596 (prp19)
Complex C
Prp19-CDC5 complex
100380596 (prp19)
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
U-box type E3
100380596 (prp19)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
100380596 (prp19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Prp19
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
PEP5_VPS11_N
Beta-prop_SPT8
Beta-prop_DCAF4
U-box
WD40_RFWD3
Beta-prop_Nup120_160
PROPPIN
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
B-prop_COPA_B_2nd
RMC1_N
Beta-prop_LRRK2
Nucleoporin_N
Cytochrom_D1
Mala_s_1-like
Cep57_MT_bd
zf-Nse
ATG16
Motif
Other DBs
NCBI-GeneID:
100380596
NCBI-ProteinID:
NP_001167352
UniProt:
C0HBN2
LinkDB
All DBs
Position
ssa05:34636787..34641527
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKFIAENGVDPMNSQPLSEEQLIDIKVSHP
IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAMPASQPAGGGSGGEPMEVSVQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRTEDLSKYRQVASHAGLHSASVPGILCMDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCI
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGQVLTKVTDEAAGVALTCAQFH
PDGLIFGTGTSDSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT
GVAFGDNAQFLSSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgcgcaatttccaatgaggtcccggagcacccttgcgtgtccccagtg
tctaaccaggtgttcgagcgccgactgatcgagaagttcatcgcagagaatggcgtggat
cccatgaatagccaaccactgtcggaagagcaacttatcgatattaaagtgtctcatcct
atccgaccaaaggctccctcttctaccagtatccctgccatactcaaggctctgcaagat
gagtgggatgcagtcatgttgcacagtttcactctgaggcagcagctacagacgactcgc
caggagctctctcacgccctgtaccagcatgacgcagcctgcagagtcattgcgcgtctt
accaaggaggtcactgcagccagagaggccctggccacactcaagccccaagccggattg
gtggcccctcaggctatgcccgcctctcagccagccggtgggggttctggtggggaacca
atggaggttagtgtgcaggtgggaatgactccagagatcatccagaagcttcaagataag
gctactgtccttaccacagagagaaagaagagaggaaagactgtgccagaggagctggtc
aggactgaggatctgagcaagtaccgccaagtagcttcccacgctggacttcacagtgcc
agtgtcccaggaatcctgtgtatggacctctgtccttcagacaccaacaaagtactcact
ggtggggctgataagaatgtggtggtatttgataagaaggaggagcagatcattgccacc
ctcaagggtcacaccaagaaggtcacctctgtcatctaccacccctcccagtctgtggtg
ttctctgcctctccagacagcaccatccgggtgtggtctgttactgggggcaactgtatc
caggtggtgcgagcgcacgaggcgagcgtgaccgggctgtcacttcacgcaaccggggac
taccttctcagctcttccgaagaccagtactgggccttctcggatatccaaactggccaa
gtccttaccaaagtcacagatgaggctgctggtgttgctctgacttgtgctcagttccac
cctgacggtctgatcttcgggacgggaacctccgactcccagatcaagatctgggatctg
aaggagcgcacaaatgtggccaacttccccggccactctggccctgtcacctccatcgcc
ttctctgagaatggatactacctggccacaggtgcccaggacagctctgtgaagctgtgg
gatctgaggaaactgaagaacttcaagaccatcgccctggacaacaactatgaggttaag
tctctggtgtttgatcagagtggtacatacttggctgtgggtggatccgacatcagggtg
tacatctgcaagcagtggtcggaggtcctcaacttcagcgaccattctggcctggtgaca
ggggtggcgttcggagacaatgctcagttcctttcctccgctggaatggacagaagcctc
aagttctacagcctgtag
DBGET
integrated database retrieval system
