Salmo salar (Atlantic salmon): 100380636
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Entry
100380636 CDS
T04363
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03008
Ribosome biogenesis in eukaryotes
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100380636 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
100380636 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
100380636 (xrn2)
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100380636 (xrn2)
03009 Ribosome biogenesis [BR:
sasa03009
]
100380636 (xrn2)
03016 Transfer RNA biogenesis [BR:
sasa03016
]
100380636 (xrn2)
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100380636 (xrn2)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
100380636 (xrn2)
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
Pre-60S particles
RNases
100380636 (xrn2)
Transfer RNA biogenesis [BR:
sasa03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100380636 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
100380636
NCBI-ProteinID:
XP_014060356
UniProt:
A0A1S3S7N8
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All DBs
Position
ssa06:complement(51630740..51659975)
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AA seq
953 aa
AA seq
DB search
MGVPAFFRWLSRKYSTIVVHCTEERSKECNGVRIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYMDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKSRIREEILGRGGYLPPDEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLSNDPGWRNITVILSDASVPGEGEHKIMDYIRRQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCAMCGQKGHELKDCQGVAREKQGEHDEFADAMPASEQE
FIFIRLCVLREYLERELTMASLPFPFDFERTVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYITENGFVKLESVELIMQAIGVAEDNIFKKRKEDDEGFKRRNKE
KKKRMKAQQQGPSFLTSGQFAPQALGGRGRPEVVQNARHQAFDMRMQGRDQHNRAGTSDG
QDGRGVKRKAEDSDSEPDPEDNVRLWEDGWKQRYYKTKFDVDATDDDFRKKVVMSYVEGL
CWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTDFELGTKPFKPLEQLMGVFPAAS
GNFLPETWRSLMSNPESSIIDFYPDDFAIDLNGKKYAWQGVALLPFVDERRLRAALAEVY
PNLSPEENKRNSLGSDMLFVGKSHSICDFIQELYRGESHEGTEMPAELCHGIQGTLNLDG
DPILPDKPVESPIPMLRDIAQNSAIGVKYKDPQFGETFVFKAVILHGAKIPAKVLKPGDW
ERGNRGRGNWRPQLGFNSNRQQVHLDQSAFRALGHSVNRQQQGGGQYSNAPPPGNYHQGN
YSRPPHGGGHFSHSRQQGLLGAPPPFNPNPVQQYPRQQYSSGGGHGWDRSMQSQGAAYQQ
NMQRGGHGGGQGQGGYHQQRGQDDRRGDRGGQPGYSSGRNYPLPPPARRYNWS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcattttttcgttggttgagtcggaaatattctacgattgttgtccat
tgtactgaggagaggtccaaggaatgcaacggtgtacggattcctgttgataccagtaaa
ccgaatccaaatgaagtggagtttgacaatttgtacttggacatgaatgggatcattcac
ccctgtacacatcctgaagacaaggctgcacccaaaaatgaagatgaaatgatggttgcc
atctttgaatacatggatcggctcttcaacattgtgcggcccagaagggttctttacatg
gctattgatggagtggcccctcgtgccaaaatgaaccagcagcggtccaggcgattccgc
gcctccaaggaaggtgtggaactggttgaggagaaatcccgcatccgagaggagatcctc
gggagaggagggtatcttccacctgatgagatcaaggagagatttgacagtaactgtatc
accccaggcacagagttcatggacaaccttgcaaagtgtctccgttactacattgcagac
agactcagtaatgaccctggatggcgtaacattacagtcatattgtctgacgccagtgtc
cctggtgagggggagcataagatcatggactatatcaggcgacagagagctcagcctcac
catgaccccaacacacaccactgtctttgtggagcggacgctgaccttatcatgctgggc
cttgccactcatgagcccaatttcaccatcatccgagaggagttcaagcccaaccagccc
aggccctgtgctatgtgtggacagaaaggccatgagctcaaggactgccagggagtggcc
agggagaaacagggagagcatgatgagtttgcagacgctatgccggcttctgaacaggag
ttcatattcatcaggctgtgcgttttgcgtgagtacctggagcgagagttgacaatggcc
agtctgccctttccctttgactttgagaggactgtcgacgactgggtcttcatgtgcttc
ttcgttggcaatgatttcctgcctcacttaccgtccttagagattagagagggtgcgata
gatcgactggtgggcatctacaaagatgttgtgcacaagactgggggttacatcacagag
aatggctttgtcaagttggagagtgttgagttgatcatgcaggctatcggtgtggctgag
gacaacatcttcaagaagcgcaaagaggatgatgagggattcaagcgaaggaataaggag
aaaaagaagaggatgaaggctcagcagcagggcccatccttcctgaccagcggtcagttt
gccccccaggcccttggcggcagaggcagacctgaggtggttcagaatgcccggcaccaa
gccttcgatatgaggatgcagggcagagaccagcacaacagggcagggaccagtgatggg
caggatggccggggtgtgaagcggaaagccgaggacagcgacagcgaaccagatcctgaa
gacaatgtcaggttgtgggaggatggctggaagcagcgatactacaagaccaagtttgac
gttgacgcgactgatgatgattttcgcaagaaggtggtcatgtcctatgtggagggtctc
tgctgggtcctgagatactactaccaggggtgcgcatcctggaagtggtacttcccgttc
cactacgccccgttcgcctcagacttcaaagacatcaaaggcatgttcaccgacttcgag
cttgggaccaagccgttcaagcccctggagcagctgatgggtgttttccctgccgccagt
ggaaacttcctgcccgaaacatggcgctcactcatgagcaacccagagtcctcaatcatt
gacttctaccctgacgactttgccattgacttgaatggaaagaagtatgcttggcaaggc
gttgcgctgctgcccttcgtggatgagcgccggctcagggcagccctggctgaagtctac
ccaaacctctctccagaggaaaacaagaggaacagccttggcagtgatatgctgtttgtg
gggaagtcccattctatctgtgacttcatccaggaactgtaccgtggagaatctcacgag
ggcaccgagatgccggcggaactatgccatggaattcaaggtacattaaatcttgacgga
gaccctatcctaccagataaaccagtggagtctcccatccccatgctacgggacattgca
cagaacagtgccattggagtgaaatataaggacccacagtttggagagacctttgtgttc
aaggctgtcattcttcatggagcaaagattcctgccaaggtgctgaagcctggagactgg
gagaggggtaaccgtggtaggggtaactggaggccccaactgggcttcaactccaaccgg
cagcaggtccatctggaccagtcagccttcagggccctgggtcacagcgttaaccgacag
cagcagggaggcgggcagtacagcaacgctccaccccctggcaactaccaccaggggaac
tacagcaggcccccccacggtggtggtcacttctcacattccaggcagcagggtcttcta
ggggcacctcccccattcaaccctaaccctgtacagcaatatccaaggcagcagtatagt
agtggtggtgggcacggctgggaccggtcgatgcagtcccagggagctgcctaccagcag
aacatgcagagaggaggccacggaggggggcagggtcagggtggctaccaccagcaacgt
ggtcaggatgaccgtcgaggagaccgtggaggacaaccgggctacagctctggacggaat
taccccttgccacccccagcaagaagatacaattggagttaa
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