Salmo salar (Atlantic salmon): 100380699
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Entry
100380699 CDS
T04363
Symbol
prp8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100380699 (prp8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
100380699 (prp8)
Spliceosome [BR:
sasa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100380699 (prp8)
Complex C
U5 SnRNP specific factors
100380699 (prp8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
100380699
NCBI-ProteinID:
XP_014018171
UniProt:
A0A1S3NSI1
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All DBs
Position
ssa20:55859298..55884990
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGIHPPAQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDAEEDSSVAEWLYEHQPLKDANKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPEDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccttcccttatagaggggtacctggtggaatgcccccaggtatccatccc
ccagcccaggttccagactacatgtctgaggaaaaactgcaagagaaagccagaaaatgg
cagcagttgcaggcgaagcgctactctgagaagaggaagtttgggtttgttgatgcccag
aaggaggacatgccacctgagcacgtccgtaagatcatcagggaccacggtgacatgacc
aacaggaagttccgtcacgacaagagggtatacctgggagccctgaagtacatgccccat
gcggtgctgaagctactggagaacatgcccatgccttgggagcagatcagagacgtgcct
gtcctataccacatcaccggagcaatctccttcgtcaacgagatcccctgggtcatagag
cctgtctacatcgcccagtggggcgccatgtggatcatgatgcgtcgtgagaagagggac
cgtcgtcacttcaaacgtatgcgtttccctccttttgatgatgaggaacctccgctggac
tacgccgataacatcctggatgtagagccactggaggccatccagatggagctggatgca
gaagaggactcctccgtggcggagtggctctacgaacaccagcccctcaaggacgccaac
aagtatgtgaacgggaccacatacaggcgttggcagttcaccctgcccatgatgtccacg
ctgtaccgtctggccaaccagctgctgacagacctggtggactacaactatttctacctg
tttgacctgaaggcgttctttacctccaaggccctcaacatggccatccccgggggacca
aagtttgaacccctagttagggacatcaacctccaagatgaagactggaacgagttcaac
gacatcaacaagatcatcatcagacagcctatcaggacagagtacaagattgccttccca
tacctgtacaacaaccttccccaccacgttcacctcacctggtaccacactcccaatgtg
gtgttcatcaagactgaggatcctgatttgccagcgttttactttgaccccctgatcaac
cccatctcccacagacactcagtcaagagtcaggagcctctgccagaggatgacgaagag
tttgagcttccagagtacgtggagcccttcctgaaggagacgcccctctacacagacaac
acagccaatggaatcgctctgctctgggcaccacgccccttcaacttgcgctctgggagg
accaggcgggccatcgacatcccactcatcaagaactggtatcgtgagcactgcccagcc
ggccagccagtgaaggtgcgtgtgtcttaccagaaactgctcaagtactacgtactcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtacttgtttcgttcctttaaa
gccaccaagttcttccagtcgactaagctggactgggtggaggtgggcctgcaggtgtgc
agacagggatacaacatgctgaacctgctcattcaccgcaagaacctcaactacttgcac
ctggattacaacttcaacctcaagcctgtcaagaccctcaccacaaaggaacgtaagaag
tccaggttcgggaatgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggatagccacgtgcagtacagactgggcaacgtggatgctttccagttggcagatggg
ctgcagtacatctttgcccacgtgggccagctgactggcatgtaccgctacaagtacaag
ctgatgagacagatccggatgtgcaaggacctcaagcacctcatctactaccgcttcaat
actggtccagtgggtaagggtccaggctgtgggttctgggcaccaggatggagggtgtgg
ctgttctttatgaggggcatcacccccctgctggagagatggctgggcaacctgctggcc
aggcagtttgaaggtcgtcactccaagggcgtggcgaagactgtgacgaagcagcgtgtg
gagtcccactttgacctggagctgcgtgcggccgtgatgcacgacatcctggacatgatg
cctgagggcatcaagcagaacaaggccagaaccatcctgcagcacctctctgagtcctgg
cgctgctggaaggccaacatcccctggaaggtcccaggcctgcccacacccatcgagaac
atgatcctacgctatgtgaaggccaaagctgattggtggaccaacacggcccactacaac
cgtgagcgaatcaggcgcggcgcaaccgtggacaagactgtgtgcaagaagaacctgggc
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggtccatacatcacagcagaggaggctgtggccatctacaccaccacagtccactggctg
gagagcagacgcttctcccccatccccttccccccgctgtcctacaaacacgacaccaaa
ctgctcatcctggccctggagaggctcaaagaggcctacagtgtgaagtccaggctgaac
cagtcccagagagaggagttggggctgatagagcaggcctatgacaaccctcacgaggcc
ctgtccagaatcaaacggcacctgctcacacagagagccttcaaagaggtgggcatagag
ttcatggacctgtacagccacctggtgcctgtgtatgatgtggagcccctggagaagatc
acagatgcctacctggaccagtacctgtggtatgaggctgacaaacgacgtctcttcccc
ccctggatcaaaccagctgacacagagcctccgccactcctcgtctacaagtggtgccaa
ggcatcaacaacctgcaggatgtgtgggagacgatggagggagagtgtaacgtgatgctg
gaatctcgctatgaaaagatgtatgagaaaatagatctgacgctgctcaacagactgctg
cgtctcatcgtggaccacaacatcgctgactacatgactgccaagaacaacgtggtcatc
aactataaggacatgaaccacaccaactcatacggtatcatccgtggtctgcagtttgcc
tcgttcatcgtgcagtactacggcctggtcatggacctgttggtgctggggctccaccgg
gccagtgagatggctggaccccctcagatgcccaatgacttcctgtccttccaggataca
gccacagagagtgcccaccccatccgcctctactgcagatacatcgaccgcatacatatc
ttcttcaggttctcagctgatgaggccagggacctgattcagaggtacctaacggagcac
cctgaccccaacaatgagaacattgtgggctacaacaacaagaagtgctggcccagagac
gccaggatgagactgatgaagcacgacgtcaacctgggtcgtgctgtgttctgggacatt
aagaaccgcctgcctcgctctgtgaccacggtccaatgggagaacagctttgtgtcagtc
tacagcaaagacaaccctaacctgctcttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgtcgcaccagctacgaggagttcacccacaaggacggagtctggaacctgcag
aacgaggtgaccaaagagcgtacagcccagtgtttcctgcgtgtggatgatgagtccatg
cagcggttccacaacagagtcagacagatcctcatggcctcaggatccaccaccttcacc
aagattgtgaacaagtggaacacagctctgatagggctgatgacgtacttccgtgaggcg
gtggtcaacacccaggagctgctggacctgctggtgaaatgtgagaacaagatccagacc
cgtatcaagatcggtctcaactccaagatgcccagtcgcttcccccctgtggtcttctac
acccccaaggagctgggagggctgggcatgctgtccatgggacacgtcctcatcccacag
tccgatctgaggtggtcgaagcagactgacgttggcatcacccatttccggtccggtatg
agccacgaggaagaccagctgattcctaacctgtaccgctacatccagccctgggagagc
gagttcatcgactcccagagagtctgggcagagtacgccctgaagagacaggaggctatc
gcacagaacaggcgtctgaccctggaggacttggaggactcttgggacagaggtatcccc
cgcatcaacaccctgttccagaaggacagacacaccctggcctacgacaagggctggagg
gtccgcactgacttcaaacagtaccaggttctgaagcagaacccgttctggtggacccac
cagcgtcacgacgggaagttgtggaacctcaacaactacaggacagacatgatccaggct
ctgggaggggtggagggcatcctggaacacacgctcttcaaaggaacctacttccccacc
tgggagggtctcttctgggagaaggccagtggctttgaagagtccatgaagtggaagaag
ctgaccaacgcccagagatctggtttgaaccagatccccaaccgtcgcttcaccctctgg
tggtcccccaccatcaacagggccaacgtgtacgtgggtttccaggtccagctggatctg
accggaatcttcatgcacggaaagatccccaccctgaaaatctccctcatccagatcttc
agggctcacttgtggcagaagatccatgagagtgtcgtcatggatctctgtcaggtattt
gaccaggagctggatgccctggagatcgagacagtgcagaaagagaccattcaccccagg
aagtcctacaagatgaactcttcctgcgctgacatactactcttcgcctcctacaagtgg
aacgtctcacgcccctcgctgctcgctgactcaaaggacgtgatggacagcacaaccacc
cagaagtactggatcgacatacagcttcgctggggagactacgactctcacgacatcgag
cggtatgccagagccaagttcctggactacaccacagacaacatgagcatctacccctcc
cccaccggggtgctcatcgccatcgacctggcctacaaccttcacagtgggtacggtaac
tggttcccaggaggcaagcctctgatccagcaggccatggctaagatcatgaaggccaac
cctgctctgtacgtcctgagggagcgcatccgtaagggtctgcaactctactcctcagag
cccactgagccctacttgtcctcccagaactacggagagctcttctccaatcagatcatc
tggtttgtggacgacactaacgtctaccgtgtcaccatccacaagacatttgagggtaac
ttgactaccaagcccatcaacggagccatcttcatcttcaaccccaggacaggccagctc
ttcctcaagatcatccacacctctgtgtgggccggacagaaacgtctgggacagctggct
aagtggaagacagctgaggaggtggctgctctgattcgttccctccctgtggaggagcag
cccaaacagatcattgtcacccggaagggcatgctggaccccctcgaggtccacttgctg
gacttccccaacattgtgatcaagggctctgagctgcagctgcccttccaggcctgtctt
aaggtggagaagtttggagacctaatcctgaaggccaccgagcctcagatggtcctgttc
aacctgtatgatgactggctcaagaccatctcctcctacacagcgttctcccgtctcatc
ctgatcctaagggcgctccatgtgaacaacgaccgtgccaaggtgatcctgaagccggat
aagaccaccatcacagagcctcaccacatctggcccacgctgaccgacgaggagtggatc
aaggtggaggtgcagctcaaagacctcatcctggctgactatggaaagaagaacaacgtg
aacgtggcgtctctgacccagtctgagatccgtgacatcatcctgggtatggagatctct
gctccgtcccagcagcgccagcagatcgctgagatcgagaagcagaccaaggagcagtcc
cagctcaccgccacgcagacacgcacagtcaacaaacacggagacgagatcatcacctca
acaacctccaactacgagacacagaccttctcctccaagacagaatggagagtcagggcc
atctctgctgccaacctgcacctgaggaccaaccacatctacgtgtcgtctgatgacatc
aaggagacgggctacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagacctgcgagcccagattgcaggttacctgtacggcaccagtccacctgacaacccc
caggtgaaggagatcaggtgtatcgtcatggtaccccagtggggaacgcatcagaccgtc
cacctacccaatcagctgccaggacacgagtacctcaaggagatggagcccctgggttgg
atccacacccagcccaacgagtctcctcaactctccccccaggacgtcaccagccacgcc
aagatcatggctgacaaccccgcctgggatggagagaagaccatcatcatcacctgcagt
ttcactcccggctcctgcactctgacggcctacaagctgactcccagtgggtacgagtgg
ggcagacagaacacagacaagggcaacaaccccaagggctacctaccctcccactacgag
agggttcagatgcttctgtctgatcgcttcctgggcttcttcatggtgcctggacaggtc
tcctggaactacaacttcatgggtgttcgccacgaccccaacatgaagtatgacctgcag
ctgtccaaccccaaggaattctaccacgaggtccatcggccctctcacttcctcaacttt
gcctccctgcaggagggagagatctacaacgcagacagagaggacatgtacggttga
DBGET
integrated database retrieval system
