Salmo salar (Atlantic salmon): 100380734
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Entry
100380734 CDS
T04363
Symbol
snf5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03082
ATP-dependent chromatin remodeling
sasa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100380734 (snf5)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100380734 (snf5)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sasa01009
]
100380734 (snf5)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
100380734 (snf5)
03036 Chromosome and associated proteins [BR:
sasa03036
]
100380734 (snf5)
Protein phosphatases and associated proteins [BR:
sasa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100380734 (snf5)
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100380734 (snf5)
SWI/SNF complex
100380734 (snf5)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100380734 (snf5)
PBAF complex
100380734 (snf5)
SWI/SNF complex
100380734 (snf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
100380734
NCBI-ProteinID:
XP_013998329
UniProt:
A0A1S3M5T8
LinkDB
All DBs
Position
ssa01:complement(145595994..145612306)
Genome browser
AA seq
370 aa
AA seq
DB search
MALSKTFGQKPIKFQLEQDGDFYMVGSEVGNYLRMFRGSLYKRYPSLSRRLASVEERKKI
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKGKRNSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSERENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFRSDFSENPLPTVEIAIRNTGDADTWCPLLETLTDAEMEKKIRDQDRNTRRM
RRLANTAPAW
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaagcaaaacctttggtcagaaaccgattaaatttcagttagagcaagatgga
gacttttacatggttggatcagaggttggaaactacctgcgtatgttcaggggctccctg
tataaaaggtacccatcactctcgaggaggttagcctcagtagaggagaggaagaagatc
gtagcatcatcgcacgccacaagtgtgactctgctgaaggcctctgaatgtgaagagatc
ttcgaggggaacgatgagaagtacaaagctgtttccatcagcacagaaccaccggcctac
ctcagggagcagaaggggaagaggaacagccagtgggtccccacgctgcccaacagctcc
caccacctggacgctgttccctgctccaccaccatcaaccgcaaccgcatgggccgcgac
aagaagaggaccttccccctgtgctttgacgaccacgacccggcggtgatccacgagaac
gcgtctcaggccgaggtgctggttcccatccgtctggacatggagatcgatgggcagaag
ctcagagatgcgttcacctggaacatgaacgagaagctgatgaccccggagatgtttgca
gagatcctgtgtgacgacctggacctgaacccactggccttcgtcccggccattgcctca
gccatccgccagcagatagagtcctaccccacagacagcatcctggacgagcagaccgac
cagagggtgatcatcaagctgaatatccacgtggggaacatctccctggtggaccagttt
gagtgggacatgtcggagagggagaactctccggagacgtttgccctcaagctgtgctcc
gagctgggcctgggaggagagtttgtcaccaccatcgcctatagcatccgcggccagctt
agctggcaccagaggacgtacgccttcaggtctgatttcagtgagaatcccctgcctacg
gtggaaatcgccatccgcaacacaggtgacgctgacacatggtgccccctgctggagacc
ctgacagacgcagagatggagaagaagatcagggaccaggacaggaacaccagacgaatg
agacgacttgccaacactgcccctgcctggtag
DBGET
integrated database retrieval system
