Salmo salar (Atlantic salmon): 100380860 Help Entry 100380860         CDS       T04363                                  Symbol sf3b1 Name (RefSeq) splicing factor 3B subunit 1   KO K12828   splicing factor 3B subunit 1 Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa03040   Spliceosome Brite KEGG Orthology (KO) [BR:sasa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     100380860 (sf3b1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:sasa03041]     100380860 (sf3b1)    03036 Chromosome and associated proteins [BR:sasa03036]     100380860 (sf3b1) Spliceosome [BR:sasa03041]  Complex A   U2 snRNP components    U2 snRNP specific factors     100380860 (sf3b1)  Complex B     100380860 (sf3b1)  Complex C    U2 SnRNP specific factors     100380860 (sf3b1) Chromosome and associated proteins [BR:sasa03036]  Eukaryotic type   Chromatin remodeling factors    B-WICH complex     100380860 (sf3b1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870 Motif Other DBs NCBI-GeneID:  100380860 NCBI-ProteinID:  XP_014020750 UniProt:  A0A1S3NZP1 LinkDB All DBs Position ssa21:complement(43317800..43337374) Genome browser AA seq 1332 aa AA seqDB search MAKIAKTHEDIEAQILEIQGMKAALVEEGADQGVGLDSTGYYDQEIYGGSDSRFAGYVTS IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRLQMAEKAKT GDLKAVNGSAASQAAAAAAAAKRKRRWDQTAEKQDQSGTPSNAGTPKKMSSWDQADQAAE QTPGHTPGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGD TPGHTTPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGAS KRKSRWDETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREI DERNRPLTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRS MKQINDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMR KAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVH KILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAF AVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEH GLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGY LIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILP PFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETI EKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQI CGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGS ILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSA REWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCT TVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPL LEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMG ALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEK NPYLRYELEYFL NT seq 3999 nt NT seq  +upstreamnt  +downstreamnt atggcgaagatcgccaaaacacacgaagacatcgaggcccagatcctggagatccagggc atgaaagctgccctggtggaggagggagcagatcagggtgtgggactggactccactgga tactacgaccaagagatctacggtggcagcgacagccgcttcgctggatatgtcacctcc atcgcggccaatgaacaggaggatgatgatgaggaggactcctcaacaagtctacttgga cagaagaaaccgggatatcatgctccggtggctatactcaatgcaataccgcagtcagat gagcagtacgacccgttcgccgaacaccggcccgctaagattgcagagcgtgaagacgag tacaaggccagacgacgacagatgatcatctctcctgagcgacttgacccctttgcagac gggggcaaaacaccggaccccaagctgcagtccaggtcgtacatggacgtcatgaaggag cagcacctgaccaaagaggagaaagagattcgtctgcagatggcagagaaggccaaaaca ggagacctgaaggctgtcaacggctctgccgcctcccaggctgctgctgccgccgccgcc gcgaagcgtaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaaccccc agcaacgccggcacacctaagaagatgtccagctgggaccaggccgatcaggctgctgag cagaccccaggacacaccccaggacacaccccaggacacaccccatccaacagccgctgg gacgagacccccggaaggaacaagggcagtgagaccccaggggccacccccagctcccga atgtgggaccccacccctagccacaccccggctggagcagccacgccaggcagaggggac acaccgggacacaccacccctggacacgggggagccacaggcagcgtgcgcaaaaaccga tgggacgagacccccaagacggagagggagacccctggtcatggaagtggttgggccgag accccccgaacagacaggggagacgagtcagtgggagagacccccacccccggggccagt aaaaggaagtcccgttgggacgagacccccgccagccagatgggctcttccaccccactg atgacccctgggaaaactcccatcggaacccctgccatgaatatggccactccctctcca ggtcacctgatgagcatgaccccagagcagctgcaggcctggcgttgggagagagagata gacgagaggaaccgacctctcacagacgatgagctggatgccatgttcccagaaggatac aaggtccttcccccaccagcaggctatgtgcccatccgtacccctgcccggaagctgtct gccacccccacccccatggggggcatgacgggcttccatatgcagcaggaggaccgctcc atgaagcagatcaacgaccagcccagtggcaacctgcccttcctcaaaccagacgacatc cagtactttgataaactgctggttgaggtggatgagtccactctgagcccagaggaacag aaggagcgtaagatcatgaaactgctgctgaaaatcaagaacgggacacctcccatgaga aaggctgctctgcgtcagatcacagacaaggcgagggagtttggagcagggccccttttc aaccagatcctgcccctgctcatgtctcctactctggaggaccaggagcgccacctgctg gtcaaggtcatagaccgcatcctctacaagctggacgacctggtccgcccatacgtacac aagatcctggtggtgattgagccgctgctgattgatgaagattactacgccagagtggag ggcagggagatcatctctaatttggccaaggctgctggcctggccactatgatctccact atgagacctgatattgacaacatggatgaatacgtcagaaatacaaccgccagagctttc gctgtcgtagcgtccgctctgggtatcccctccctcttgcccttcctcaaggctgtgtgt aagagcaagaagtcatggcaggcccgccacacgggcatcaagattgtccagcagattgcc atcctcatgggttgtgccatcctgccccatctgaggagtctggtggagatcatcgagcat ggtctagtggatgagcagcagaaggtgcggaccatcagtgccctggccatcgccgccctg gctgaggctgccacgccctacggtattgagtcctttgactccgtactcaaacccctgtgg aagggtatccgacagcacagaggaaagggtctggctgcgttcctgaaggccattggctac ctgatccctctgatggatgctgagtatgctaactactacaccagagaggtcatgctgatc ctcatcagagagttccagtctcctgacgaggagatgaagaagatcgtgctcaaggtggtg aaacagtgttgtggtactgacggtgtggaagccaactacatcaagacagagatcctgcct cccttcttcaagcacttctggcagcacaggatggccctggacagacgcaactacagacag ctggtggacaccacagtggagctggccaataaggtgggagcagcagagatcatctctcgt atcgtagatgacctgaaggacgaggcagagcagtacaggaagatggtgatggagaccata gagaagatcatggggaacctgggagctgctgacatcgaccacaagctggaggagcagctg atcgacggcatcctgtacgccttccaggaacagaccacagaggactctgtgatgctgaac gggtttggcacggtggtaaatgccctggggaagagggtgaagccctacctgcctcagatc tgtggtacagtgctgtggcgtctcaacaacaagtccgccaaggtccgccagcaggctgct gacctcatctcccgcaccgccgtggtcatgaaaacctgccaggaggagaagctgatgggt cacctgggagtggtgttatatgagtatctaggagaagagtatcctgaagtactgggaagt atccttggtgctctcaaggccatcgtcaatgtcatcggtatgcacaagatgactccacca atcaaagacctgctacctcggctgacgcccatcctgaagaacagacatgagaaggtgcag gagaactgtattgacctggtgggcaggattgctgacaggggtgctgagtacgtgtcggcc agggagtggatgcggatctgctttgagctgctggagctcctcaaggcccacaagaaggcc atccgcagagccaccgtcaacaccttcggatacatcgccaaggctatcggaccccatgat gtgctggccacactactcaacaacctgaaggttcaggagcgtcagaacagagtgtgtacc accgtggccatcgccatcgtggctgagacctgttctcctttcaccgtgctccccgctctc atgaacgagtaccgcgtgcctgagctcaacgtgcagaacggcgtgctcaagtccctgtcc ttcctgtttgagtacatcggggagatgggcaaggactacatctatgctgtcacgcccctg ctggaggatgcactgatggacagagacctggtccacagacagactgccagtgctgtggtg cagcacatgtccctgggtgtctacggcttcggctgtgaggactcccttaaccacttgttg aactacgtgtggcccaatgtgtttgagacgtcgccccatgtaatccaggctgtcatgggg gccctggagggcctcagggtggctatcggcccctgccgcatgctgcagtattgcctgcag ggtctcttccacccagccaggaaggtccgagacgtctactggaagatctataactccatc tacatcggttcccaggatgctctgatcgctcactacccccacgtctacaacgatgagaag aacccttacctccgctatgagctggagtacttcctgtga

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