Salmo salar (Atlantic salmon): 100380870
Help
Entry
100380870 CDS
T04363
Symbol
sk2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100380870 (sk2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
100380870 (sk2l2)
03041 Spliceosome [BR:
sasa03041
]
100380870 (sk2l2)
03009 Ribosome biogenesis [BR:
sasa03009
]
100380870 (sk2l2)
03016 Transfer RNA biogenesis [BR:
sasa03016
]
100380870 (sk2l2)
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100380870 (sk2l2)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100380870 (sk2l2)
Spliceosome [BR:
sasa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100380870 (sk2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
100380870 (sk2l2)
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
Pre-60S particles
Helicases
100380870 (sk2l2)
Transfer RNA biogenesis [BR:
sasa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100380870 (sk2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100380870
NCBI-ProteinID:
XP_013981578
UniProt:
A0A1S3KSA6
LinkDB
All DBs
Position
ssa01:111813026..111866578
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTTSTKKKLAVPEKGKSTSKNGKGGKDEFYAAKSKREADNNGTD
EVVFGKRSKLETLSTEEINLADCMPKVRVEPVETVEGCNHEVALPANEDYTQLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGSKWDPKGRKG
GTRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNN
AIDCLSDDDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTNARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMADEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVENMA
KLEEMYNAIEIPNEESVVTYYKIRQQLAKLSKEIEEFIHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFSKKSNVKAITGDADPLYVVEVLVHCSKESVKNTATEAAKPAAAGEKGEM
QVVPVMLHLLTSISSVRLYSPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYSHPMHSDPSLEAVYSLCERKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFASSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSAEQVT
ALLSVFVFQENVNEMPKLTEQLAGPLRQMQECAKRVAKVSAEAKLEVDEDTYLDKFKPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcctttggtgacgatttgttcagcgtgtttgatgaagaacaaacaacttca
actaaaaagaaactagcggtacctgaaaaagggaaatcgaccagtaaaaatggcaaagga
ggaaaggatgagttctatgcagccaagagtaagcgggaagcagacaacaacgggacagat
gaggtggtgtttgggaagaggtccaagctggagactctttctacagaggagatcaatctt
gccgactgcatgcccaaagtgagggtggagccggttgagacagtggaaggatgcaaccac
gaggtggccctaccagccaatgaggattacacacagcttaagcctcgtgtggggaaagca
gccaaggagtaccccttcattctggatcccttccaacgtgaggccattctgtgtatcgat
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagctctgagggagaagcagagggtcatcttcaccagccccatcaaa
gccctgagtaaccagaagtacagagagatgtacgaagagttccaggatgttggcctgatg
accggtgatgtcaccatcaaccccactgcctcctgcctcattatgactaccgaaatcctg
aggagcatgttgtaccgagggtcagaggtcatgagggaggtggcctgggtcatctttgat
gagatccattacatgagagatgccgagcgtggcgtggtctgggaggagaccatcatcctg
cttcctgacaacgtccactatgtcttcctgtccgccaccatcccaaacgccaagcagttc
gccgaatggatctgccacctccacaaacagccctgtcacgtggtgtacactgacttccgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgttgtg
gatgagaacggagagttcagggaggacaacttcaacacggccatgcaggtgctgagagac
actggtgactctggaggcagcagcggagggagcaaatgggaccccaaggggcgcaaagga
gggacacgagggccgtccaacgtgtttaagattgttaaaatgatcatggagcggaacttc
cagcccgtcatcatctttagcttcagtaagaaggagtgtgaggcctatgccctgcaggtg
tccaagctcgacttcaacacagatgaggagaagaagctggtggaggaggtgttcaacaat
gccatagactgtctgtctgacgatgacaagaagctgcctcaggtggagcacgtcctgcct
ctattgaagagaggtatagggattcatcacggaggactgctccccatcctaaaggaaacc
atcgagatcctgttctctgaggggctactcaaggccttgttcgccacagagacctttgcc
atgggcatcaacatgcccgcccgcactgtcctgttcaccaacgcacgcaagtttgatggc
aaagacttccgctggatcacgtctggtgagtacatccagatgtccggtcgagctggcagg
agagggatggatgagaggggtatcgtcatcttcatggcggatgagaagatgagccctgca
gttgggaaacagctgcttaagggctcggcagaccctctgaacagtgcctttcatctcacc
tacaacatggttctcaacctgctgcgagtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtacccggggtcgtagagaatatggcg
aagctggaagagatgtacaacgccatagagatccccaacgaggagagtgtggtgacctac
tataagatccgccaacagctggccaaactgagcaaggagatagaggagttcatccacaaa
ccaaaatactgccttcccttcctccagcctggaagactggtcaaggtcaaaaatgaagat
gctgactttgggtggggcgtggttgttaatttctcaaagaagtcaaatgtcaaggccatt
acgggtgatgcagaccctctatacgtggtagaggtgctggtccactgcagtaaggagagt
gtgaagaacacagctacagaggctgccaaacctgctgccgctggggagaagggtgaaatg
caggtggttcctgtgatgctccacctcctgacctccatcagttcagttcgtctctacagc
cccaaagacctgcggccttatgacaacagacagagcatgctcaaatccatacaggaggtg
cagaagaggttcccggacggcgttccccttctggaccccatcgatgacatgggcattaag
gacccgggcctaaagaaggtcatccagaaggtggaggcattcgaacacaggatgtactcc
caccccatgcactctgaccccagcctggaggccgtctactccctctgcgagaggaaagcc
ctgattgcgggggatatcaaaggggccaagcgggagctgaagaaggctcgaaccgtgctg
cagatggacgagctcaagtgcaggaagcgcgtcttgaggcgtctcgggttcgcctcttcc
tcggatgtcatcgaaatgaagggccgggtggcctgtgagatcagcagtgctgatgaactt
ctactgactgagatggtgttcaacggcctgttcaacgatctgtctgcagaacaggttacc
gctctactcagcgtcttcgtcttccaggagaacgttaacgagatgcccaagctgacagag
cagctggctggacctctgagacagatgcaggagtgtgccaagcgcgttgccaaggtgtct
gcggaggctaagctggaggtggatgaggacacctacctggacaagttcaagcctcacctg
atggacgtggtctacacctgggctaacggctccaccttcgcccagatctgcaagatgacc
gacgtctttgaagggagtatcatccgctgcatgcgtcgcctggaggagctgctccgtcag
atgtgtcaagcagccaaggccatcggtaacaccgagctggagaacaagtttgcggagggt
attacgaaaatcaagagggatattgtgtttgctgccagtttatatctgtga
DBGET
integrated database retrieval system
