Salmo salar (Atlantic salmon): 106560824
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Entry
106560824 CDS
T04363
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106560824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106560824
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106560824
mRNA degradation factors
5'-3' decay
Decapping complex
106560824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
WD40_Prp19
NBCH_WD40
WDR55
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
106560824
NCBI-ProteinID:
XP_013979634
UniProt:
A0A1S3KMS4
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All DBs
Position
ssa10:80357724..80406768
Genome browser
AA seq
1417 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSVDASPSENQSKTSFNGELNGLLGAELIGAGDR
STMAESTGPNSENMNTQQCQIICLSGDDGSTCIPITSNYVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKILDQVIVHVRRPEDTLLNSNRRLIWCP
FILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTDR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCL
LFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKA
SLDLSAECLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSHSRL
CHTEVLPPDEESESMTADGNQGPMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSLFL
PHSNSNNGFGFSDHLTDMSVEGLSSDKESGCGSENDLCKIPALADFLSPSGTAAMPKLMT
PDAFMTPSASVPASPGSSASSLTIVTAMSSNSDSGARGGEELTQSPKMSVESNSILISGL
GDNMPMYHLPQETTPHTLMFPLTYPLRPLQGLPSPNPPLSLDPQVIEPMLIQQASPTRAR
SPDVISSASTAMSQDIPEIASETLQRGLGGVSGAESREPLPALHTDSMASAASALHLLSP
RNRNSSDHGHLPLELGAVVGAVEVEQRLSNTPSLLENALSQENAAAAASCSDNNVNHPWP
AAPDITRETRNSLRDNGLGHCSREEIKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDE
VASLESSSGNCGARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPEQHHQQ
MNPEVLEELLILLRNQQREIAELHQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHE
QRRMERILAEGHNRNQQLQEHLSQQLGQTLSNTLCNRLDKTLREEMKKTVPPTITKSLEP
VTAQMSNTIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQGI
VLPVFERGCQSMFQQINESFKQGTHEYIQQLETHVKNKKQHEQEARDPMIGQLQQMIDTF
QNSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSMAMKEQQAAVNSS
IMQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLNLVLYVCETID
SQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSAV
LSQVRQKLFQFLQQDPHSPLSKRARRLVMMLQGLVNH
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggaccgacccgggaatagcgttgacgcctctccaagtgagaaccaaagcaaaaca
tctttcaatggcgaattgaatggacttctgggagcagaacttataggagcaggcgacagg
tcaaccatggctgaatccacaggccctaattcagagaacatgaacacccaacagtgtcag
atcatctgcctctctggggatgatggctccacttgcattcccatcacatccaactatgtt
gaaattgtggccagtcgagactcaagcattgacagcaaggcacgtggcagcaacaaggta
aaaatccagcctgtcgccaagtacgactgggagcacaagtattactacggcaacctcatt
gcagtctctaacgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatc
cgtgtgttgagcttgggctcggcagagcgcaccctgctgaagggcttcactggtgcagtc
acagacctggcctttgcacacctggactccaccctgctgggatgtgttgacgaggctggt
aacctggtcatctggcagctcacctgccatagcagcaagatcctggatcaagtcattgtc
catgtccggaggcctgaggacacacttctgaactccaataggaggttgatctggtgtccc
ttcatcctagaggacaatgaagagaaccctgaggatgccagccagaccctggccctactg
catgaagacagagctgaagtgtgggatctggagatcctccgcagcaacaacagcacctgg
ccagtagatgccactgacctgaaggacggcgttataaccataaaaggacatacagatcgc
atcagtgaaggtgccctgtctccggatggcacagtcttggccacagccagtcatgatgga
tatgtaaagttctggcaaatctacattgaaggacaggaccagccaagtcctctccccggc
ttcttccacagatgtctacacgagtggcagccccacaacgggaaccccctttcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagatgttccgttctggcgctttctgatt
actggagctgatcagaaccaggagttgaagatgtggtgcacagtgtcatggacctgcctg
cagaccatcaggttctcaccagacccgttcaactcctcagtcctgccctgtctgaaggcc
agtctggacctgtctgcagaatgcctcatcctcagtgacgtacagagaaaggtgttgtat
gtgatggagttgttgcaggaccaggaaaaaggcagagccagcttcacagccgtgtcagag
ttcttgctcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccgcctg
tgccacacggaggtcctcccgccagacgaggagagcgagagtatgactgcagatggtaac
cagggaccaatggaatccaaagctgggatccaaatcaagctatattgtgtccacacaaag
tcccttcaagatgtgcagatctggttccagccaaaccttggctctggctccttgttcctg
cctcactcgaactcaaataatggctttggtttttcagatcacttgacagacatgagtgtg
gaaggtttgagctctgataaggagtctggatgcggctccgaaaatgatctctgcaagatt
cccgctcttgctgacttcctgtccccttccggcactgctgctatgcccaagctcatgacc
cctgacgccttcatgacccccagtgcttcggtcccagcctccccaggcagcagtgccagc
agcctgaccatagtaacagccatgagcagcaactctgacagtggcgccaggggaggagag
gagctgacccagagccctaagatgtctgtggagagcaactccatcctcatctcaggctta
ggggacaacatgccgatgtaccatcttccacaagagaccactcctcatacgctcatgttc
cccctcacctaccccctccgccctctacaggggcttccctctccaaacccgcccctctcg
ctggacccgcaggtcattgagcctatgctgattcagcaggcctctcctacccgggcccgc
tctccggatgtcatctcatctgcctccacggccatgtctcaggacattcctgagatcgcc
tctgagacgctgcagcgaggcctggggggggtgtctggagctgaatctcgagaacctctc
ccagccctccacacagacagcatggcttctgcagcctcagctcttcacctcctctctcca
cgaaaccggaacagctctgaccatggccacctgcccctggagctgggtgctgtagtagga
gcagtggaggtggaacagaggctcagtaacaccccctcactactggagaacgccctgtca
caggagaatgctgctgccgctgcctcctgctcagacaacaatgtgaaccacccgtggcct
gcagctcctgacatcacacgggaaacacgcaacagcctgcgggacaatggcctgggacac
tgctcgagggaggaaattaaggacagacacatgtcctctccataccacagacgcacctac
cacttaacccagaatgacagtcaggacgccagtgcagaacagagtgaccatgacgatgag
gtggccagtctagagtcgtcttcagggaactgtggagccaggtcgtctcaaagattgcca
gtgaaggagtggaagagctctcccagaggctcccctaaactaaagaggaagagtaaaaaa
gacgacggggatgcatctcatgcctctcagtccaggcagcctgagcagcatcatcagcag
atgaacccagaggtgctggaagagctcctgattttgctccgtaaccagcagagggagata
gcggagctccatcagagtcagctggagctgcttcagagagtgacaggacacatggacgcc
gtgcagagctctgtcatagcccacgtagagcacgtcatggtcagccagcaggagcacgaa
cagaggagaatggagagaatcctagcagagggacacaaccgtaaccagcagctccaggag
catctctcgcagcagctgggtcaaactctcagtaacaccctttgtaatcggctggacaag
actctccgagaggagatgaagaagactgttcctcccactatcaccaagagcctggagcct
gtcactgcccagatgagtaacaccattgctgctaagctgacagctgtggaggcagcactg
aaggagaatgttagcaaagtcgtgaagtcaaagaacaccacagatgctattggccgggca
gctgccgaggcaatgcaggggcctatccaggctgcctacaaagatgctttccagggcatt
gtgctgcctgtgtttgagaggggctgccagtctatgttccagcagatcaatgagagcttc
aagcagggcacccatgagtatatccagcaactggagacccatgtgaagaacaagaagcag
catgagcaggaagcacgggatcctatgattggccagctgcaacagatgattgacacgttc
cagaactcaacggatcagctggccaccaccatcacagcaagtgtccgctctgaggtccag
catcagctccacatgacggtgggaaacttgcaggactcgatcctgacccaggtgcagcgc
attgtgaagggtgaggtgagtatggccatgaaggagcagcaggcagctgtgaactccagc
atcatgcaggccatgcgctctgctgcaggcacgcctgtccccactgctcacctggactac
caggcccagcaagccagcatcctgcagctgctgcagcagggacagctcaaccaggccttc
caacaggccctgtcagcctctgacctgaacctggttctgtatgtgtgcgagaccatcgac
tcccagcaggtgtttggacagcatccctgccccctcatccagccagtgctgctgtccctc
atacagcagctgtccactaacctggccacacgctctgagctcaagatcagttacttggag
gatgctgtgatgaacctggaccatggggatccggtgacgagggaccacatgagtgcggtg
ctgtcccaggtccgacagaagctgttccagttcctgcagcaggacccacacagtcctctc
agcaagagagcccggcgcctggtgatgatgcttcagggcctggtcaatcactag
DBGET
integrated database retrieval system
