Salmo salar (Atlantic salmon): 106560859
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Entry
106560859 CDS
T04363
Symbol
sf3b3
Name
(RefSeq) splicing factor 3b subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106560859 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106560859 (sf3b3)
03041 Spliceosome [BR:
sasa03041
]
106560859 (sf3b3)
03036 Chromosome and associated proteins [BR:
sasa03036
]
106560859 (sf3b3)
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
106560859 (sf3b3)
Spliceosome [BR:
sasa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106560859 (sf3b3)
Complex B
106560859 (sf3b3)
Complex C
U2 SnRNP specific factors
106560859 (sf3b3)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
106560859 (sf3b3)
TFTC complex
106560859 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
106560859
NCBI-ProteinID:
XP_013979713
UniProt:
A0ABM3CC33
LinkDB
All DBs
Position
ssa10:complement(79037815..79088133)
Genome browser
AA seq
1280 aa
AA seq
DB search
MTSQIVKRARVRQKSVCPQKYQQIDGATEIHNLVDISFILTDTSNLVLLWPLLPAPEGRE
TDTMFLYNLTLQRATGITHAIHGNFSGTKMQEIVVSRGKIIELLRPDANTGKVHTLLTME
VFGIIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVP
GQFLAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGF
ENPMFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLIT
VPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKS
MFFFLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATSMCVLKTGFLFVSSEFGNHY
LYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLAN
EDTPQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVS
FVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWK
TPGKKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPP
GEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKEDELGVK
GTVGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSS
RSWLSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQV
AFPLQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAE
MAAAFLNENLPEAIFGAPKAGSGQWASLVRLVNPIQGTTLDLVQLEQNEAAFSVTVCRFA
SGGEDWYVLVGVARDMILNPRSVGGGFIYTYRLGGGGDKLEFMHKTPVEDVPLAIAPFQG
RVLVGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVTDVQESLFWVRYKRN
ENQLIIFADDTHPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALW
DRGLLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHED
HDFFQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEEL
DRTPPEVSKKLEDIRTRYAF
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgcagatcgtgaagagggcccgcgttcgacagaaaagcgtttgtccgcagaag
tatcaacaaattgacggtgcgactgaaattcacaatctagttgatatcagtttcatccta
actgatacatcgaacctggtgttgctgtggcctcttttacctgcacctgaaggtagagaa
accgacactatgtttctgtataacctgaccctgcagcgtgccaccggcatcacccacgcc
atccatggaaacttctcaggaaccaagatgcaggagatagtagtttccagggggaagatc
attgagctgctgcgtccagatgccaacacagggaaggttcacaccctgcttaccatggag
gtgtttggcatcattcgctccctcatggccttcaggctgacaggaggaactaaagactat
attgtggtgggcagtgactcaggccgcatcgtcatcctggagtaccacccctccaagaac
atgttcgagaagatccatcaggagacctttggcaagagtggatgtcgtcgcatcgtccct
ggacagttcctcgccgtcgaccccaagggcagagcagtcatgataggtgccattgagaag
cagaagctggtgtacatcctgaacagagatgcagcagcgcgtctcaccatctcctctccc
ctggaggctcacaaggccaacacactggtctaccatgtggtaggagttgatgtgggtttt
gaaaaccccatgttcgcctgtctggagatggactatgaggaagctgacaatgaccccact
ggtgaggctgcagccaacacccagcaaaccctgaccttctatgagctggacctgggtctg
aaccacgttgtgcgcaagtacagcgaggccctggaggagcacggcaacttcctcattaca
gttcctggaggctctgatgggcccagtggagttctcatctgttcagagaactacatcacc
tacaaaaactttggggaccagcctgacattcgctgtcccatcccacgtaggaggaatgac
ctggatgaccctgagcgaggcatgatctttgtctgctcagccacccacaagaccaagtcc
atgttcttcttcctggcccagacggagcagggtgacattttcaaggtcaccctggagacc
gatgaggagatggttacagagatcaggatgaagtactttgacaccatccctgtagccaca
tccatgtgcgtgctgaagaccggcttcttatttgtgtcctcagagtttggtaaccattac
ctgtaccagatagcccatctgggagatgacgatgaagagccagagttctcctctgccatg
cccctggaggagggagataccttcttcttccagccacgccccctcaagaacctggtgctg
gtggacgagcaggagaacctctcccccatcatgtcctgccagattgctgacctggctaat
gaggacactcctcagctgtatgtggcctgtggcaggggacccaaatccaccctccgagtc
ctcagacatggactggaggtatcagagatggctgtgtctgagctgcccggtaaccccaat
gctgtgtggactgtgcgccgacacattgaagatgagtttgacgcatacatcatcgtttcc
ttcgtcaacgctaccctggttctatctatcggtgagaccgtagaggaagtgacagactct
ggcttcctggggaccacccccaccctctcctgctctctgctgggggaggatgctcttgtg
caggtgtatcctgatgggatccgtcacatccgtgctgataagcgtgtgaatgagtggaag
actccagggaagaagaccattgtgcgctgtgcagtcaaccagaggcaggtggtcatcgct
ctgaccggaggagagctggtctactttgagatggacccttctggccagctgaatgagtac
acagagaggaaggagatgtcagctgacgtggtgtgtatgagcctggccaatgtcccccct
ggcgagcagcgctcccgtttcctggcggtggggctggtggataacaccgtccgcatcatc
tcactggacccctcggactgtctccagcccctcagtatgcaggccctgccagcacagcct
gaatctctgtgtatagtggagatgggaggagtggagaaggaagatgagctaggagtgaag
ggcactgtcggcttcctctacctcaacatcggactgcagaatggtgtgttgctcaggacc
gtgctggacccagtgactggagacctgtctgatactcgtactcggtacttggggtcgcga
cctgtaaagcttttccgcgtcaggatgcagggacaggaagctgtgttggccatgtctagt
cgctcctggctgagttattcctaccagtcccgattccatctgacgcccctgtcctatgag
acgctggaatatgcctctggcttcgcctctgaacagtgtccagagggcattgtggcaatc
tccaccaacaccctgaggattctggccttggagaagctgggtgccgtgttcaaccaggtg
gccttccccctgcagtacacacctcgcaagtttgtcattcacccagagacaaacaacctg
atactcatagagactgatcacaatgcctacacagaggccaccaaggcccagcgcaagcag
cagatggcagaggagatggttgaggcagctggtgaggatgagagggagctggcagcagag
atggctgctgccttcctcaatgagaacctgccagaggccatctttggggcgcccaaggcc
gggtctggccagtgggcctctctggtgcgtctggtcaaccccatccagggaaccactctg
gaccttgtccaactggagcagaatgaggctgccttcagtgtgactgtttgtcgatttgcc
agcggaggtgaggactggtatgtgctggtgggggtggcccgggacatgatccttaaccct
cgctctgtgggaggcggttttatctacacctatcggctgggagggggaggggacaaactg
gagtttatgcacaagactccagtggaggacgttcctctggcaatcgctccgttccagggc
cgtgtgctggtgggcgttggcaaactgctgcgcatctatgacctgggcaagaagaagctg
ctccggaagtgtgagaacaagcatgtgcccaacctggtgactggtatccacaccatcggt
cagcgggtcatagtgactgatgtacaggagagtctgttctgggtgcgctacaagcgcaac
gagaatcagctgatcatcttcgctgacgacacccaccctcgctgggtcaccaccgcctgc
ctgctggactacgacaccatggcttcagccgacaagtttggcaacatcagcattgtgcgc
cttccccctaacaccagtgacgatgtggatgaggacccaactgggaacaaagcattgtgg
gatagaggtctgctgaacggagcttctcagaaggctgaagtgatcatgaactaccacatt
ggggagacggtgctgtcactgcagaagaccacactgatccccggaggctcggaatctctg
gtctacacaactctgtctggaggcatcggcatcctggtgcccttcacttcccacgaggat
catgacttcttccagcacttagagatgcatatgcgctcagagttcccccctctgtgtggc
agggaccacctcagcttccgctcctactacttccctgtaaagaatgtgatagatggagat
ctgtgtgagcagttcaactccatggacccccacaagcagaagagtgttgctgaggagctg
gaccgtaccccccctgaggtctcaaagaaactggaggacatccgcacacgctatgccttc
tag
DBGET
integrated database retrieval system
