Salmo salar (Atlantic salmon): 106561304
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Entry
106561304 CDS
T04363
Symbol
rag1
Name
(RefSeq) recombination activating 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
106561304 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sasa04121
]
106561304 (rag1)
Enzymes [BR:
sasa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106561304 (rag1)
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106561304 (rag1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1
RAG1_C
RAG1_pre-RNase_H
RAG1_ZnC2
RAG1_DNA-bd
zf-C3HC4
zf-C3HC4_2
TRAF3_RING
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
zf-RING_10
zf-RING_2
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
106561304
NCBI-ProteinID:
XP_013980581
UniProt:
A0A1S3KPD4
LinkDB
All DBs
Position
ssa10:complement(92060779..92067876)
Genome browser
AA seq
1101 aa
AA seq
DB search
MRRGAPREPTPAETGKTRALADTMEEGTLETYAPRCSMPAELHHPYSKFSDWKFKLFRVR
SMERAPLPGEMQLERGALSDVVASAPLGETVGDVVGLPGSVMKLCLGGKSKENIEGPGKR
VDLKLQEMDTHMNHLRCLCRLCGGALRKAKGPEHEVQGLLDEASRSALRRMGCKATSWPE
VILKVFKVDVAGDMEVVHPPFFCQRCWTLAMRGGGFCSFSRTHVPEWRPHTTLCLLCHPK
KPSLQRRGRKRRKPTRGAQRLAKRSKWDLQDNAATVGEKRAWRTVIDPHQGPGLRPWVRS
SVQRAQWVKNITLCQKEHLSARLLSEDLPVDFLSSVTCQVCDHLLSEPVQSPCRHLFCRS
CIAKYIYSLGPHCPACTLPCGPADLTAPAKGFLGVLHSLPLLCPRESCGERVRLDSFRAH
CLGHHLEEVDGDHKSAENCLDNFLPVNKGGRPRQHLLSLTRRAQKHRLRDLKTQVKVFAE
KEEGGDTKSVCLTLFLLALRAGNEHRQADELEAMMQGRGFGLHPAVCLAIRVNTFLSCSQ
YHKMYRTVKATSGRQIFQPLHTLRAAEKELLPGYHPFEWQPALKSVSTSCHVGIIDGLSG
WVASVDDSPADTVTRRFRYDVALVSALKDLEEDIMEGLRERGLEDSACTSGFSVMIKESC
DGMGDVSEKHGGGPAVPEKAVRFSFTIMSVSIQAEGEDEAITIFREPKPNSEMSCKPLCL
MFVDESDHETLTGVLGPVVAERNAMKHSRLILSVGGLSRSFRFHFRGTGYDEKMVREMEG
LEASGSTYICTLCDSTRAEASQNMTLHSVTRSHDENLERYELWRTNPHSESAEELRDRVK
GVSAKPFMETQPTLDALHCDIGNATEFYKIFQDEIGEVYHKTNPSREQRRSWRAALDKQL
RKKMKLKPVMRMNGNYARKLMTREAVEAVCELVRSEERQEALRELMGLYIQMKPVWRSTC
PAKECPDQLCRYSFNSQRFAELLSTVFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKTFELEDVLKHHWLYTSKYLQKFMEAHKNSAKALQATI
DTVESQETQEDADMSLDVPDF
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgcggagaggagccccaagggaaccgacgccagctgagactggaaaaacaagagccctt
gctgacactatggaggaggggaccctggagacatatgccccccggtgctccatgccggcc
gagctccatcacccctactccaagttctcagactggaagttcaagctgttccgggtcagg
tccatggagagggccccgctgcccggggagatgcagctcgagagaggggccttgtctgac
gttgtggcctctgcacccctgggggaaactgtgggggatgtggtgggtctcccagggagt
gtgatgaagctttgcctggggggtaagagcaaggagaacatagagggcccgggaaagaga
gtggacctgaaactccaggagatggacacacacatgaaccacctcaggtgtctgtgccgt
ctctgtggcggggccctgaggaaagccaaaggtccagagcatgaagtccaggggcttctg
gacgaggctagcaggagtgccctgcgtaggatgggctgcaaggccaccagctggccagag
gtcatcctcaaggtcttcaaagtggacgtggcgggggacatggaggtcgtccatccgccg
ttcttctgccagcgctgctggacattggccatgcgaggagggggcttctgcagcttctcc
aggacccatgtcccagagtggagaccccacaccaccctctgcctcctctgccaccccaag
aaaccctcactacagaggagagggaggaagaggaggaagcccactcgtggagcccaacgc
ctggccaagaggtccaagtgggacctccaggataacgctgctactgttggtgagaagaga
gcctggagaacagtgatagatcctcaccagggacctggacttagaccctgggtgagatcc
agcgtccagagagctcagtgggtgaagaacatcaccctctgccagaaagagcaccttagt
gccagactgctgtccgaggacctccctgtggacttcctgagctcagttacctgtcaggtg
tgtgaccacctgttgtctgagcccgtccagtccccctgcagacacctcttctgccgcagc
tgcattgctaaatacatctactctctgggcccccactgcccggcttgcaccctgccctgc
ggccctgccgaccttactgccccagctaagggcttcctgggggtcctgcactccctgccg
ctgctttgccccagagagagctgtggggagcgggtacggctggactccttcagagcccac
tgcttgggccaccatctggaggaagtggatggggaccacaagtcagcagaaaattgcctg
gacaacttcctgcctgtcaacaaagggggaaggccccgacagcatctcttgtcactgacg
aggcgtgcccagaagcaccggctgagggacctgaagacccaggtgaaagtgtttgcagag
aaggaagaaggtggagacaccaagtcggtgtgcctgaccctgttcctgctagccttgagg
gcgggaaacgaacaccggcaggcagacgaactggaggccatgatgcaaggcaggggcttt
ggcctgcatcctgctgtgtgtctggccatccgggtcaacacgttcctgagctgcagccag
taccacaagatgtaccgcaccgtcaaggccaccagtgggcgccagatcttccagcccctg
cacaccttacgcgctgcagagaaggagctcctcccaggctaccacccctttgagtggcag
ccggccctcaagagtgtgtccacatcctgccatgtggggatcattgacgggctatcaggg
tgggtcgcttcggtggacgactccccagcagatacagtcacgcgtcggtttcgctacgac
gtggccctggtgtcggccctgaaggacctggaggaggacatcatggaggggctgagagag
cgaggcctggaggacagtgcttgcacctcgggcttcagcgttatgatcaaggagtcctgc
gatggcatgggggacgtcagtgagaagcatggcggcgggccggccgtcccggaaaaagct
gtgcgtttctccttcaccatcatgtccgtctctattcaagctgagggagaagatgaggcg
atcaccattttccgggagcccaagcccaactcggagatgtcctgcaagccgctctgcctg
atgtttgtggacgagtcggaccacgagactctcacaggcgtcctggggcctgtggtggct
gaaaggaacgctatgaagcacagccgtctcatcctgtctgtgggcggcctttctcgctcc
ttccgcttccacttccggggcacgggctatgatgagaagatggtgcgagaaatggagggt
ttggaggcctctggctccacttacatctgcacgctatgtgactccactcgggcagaggcc
tcccaaaacatgactctccactctgtcacccgcagccacgacgagaacctggagcgctat
gaactttggaggaccaatcctcattctgaatcagctgaagagctgcgagaccgagtcaaa
ggcgtctctgccaagcccttcatggagacccagcccacactggatgccctgcactgtgat
attggcaatgccaccgagttctacaagatctttcaggatgagataggggaggtctatcat
aagacaaaccccagccgggagcagcgtcggagctggcgggccgccctggacaagcagctg
agaaagaagatgaagctgaagcctgtaatgaggatgaatgggaactatgcacggaagctg
atgacccgggaggcagtggaggcagtgtgtgagctggtgcgctcagaggagcgtcaggaa
gccctgagggagctgatggggctctacatccagatgaagcctgtgtggcgctccacctgc
ccggccaaggagtgcccagaccagctctgccggtatagcttcaactcccaacgcttcgca
gagctgctctccaccgtcttcaagtacaggtatgacggaaagatcaccaactacctgcac
aagaccttggcccatgtgccagagattgtggagagggatggctccatcggggcctgggcc
agcgaggggaatgagtctgggaacaagctgttcagacggttcaggaagatgaatgcccgt
cagtccaagacctttgagctggaggacgtgctgaagcaccactggctctacacatccaag
tacctgcagaagttcatggaagctcacaagaactctgccaaagctctgcaggccaccatt
gacactgtggagagtcaggagacacaggaggatgctgacatgtcactggatgtcccagac
ttttga
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